BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27000.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921531 jgi|Araly1|921531|scaffold_102812.1 1567 0.0
> Ahg921531 jgi|Araly1|921531|scaffold_102812.1
Length=966
Score = 1567 bits (848), Expect = 0.0
Identities = 928/967 (96%), Gaps = 3/967 (0%)
Strand=Plus/Plus
Query 124 TGTAAAAAT-AGTCGGAGCTATGGCGATGCAGGCCGGAGTTGGCTTATCCAGGATCTTTC 182
||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1 TGTAAAAATCAGTCGGAGCTATGGCGATGCATGCTGGAGTTGGCTTATCCAGGATCTTTC 60
Query 183 TCTTAGCCGGAGCAGGTTACACTGGTACGATCATGATGAAGAATGGAAAATTGTCGGATT 242
||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 61 TCTTAGCCGGAGCAGGTTATACTGGTACGATCATGATGAAGAACGGCAAATTGTCAGATT 120
Query 243 TGTTGGGTGAATTGCAGAGT-TTGGTGAAGGGAATGGAGAAATCTGGAGAAGGGTCTGAG 301
||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct 121 TGTTGGGTGAATTGCAGGGTCTT-GTGAAGGGAATGGAGAAATCTGGAGAAGGATCTGAA 179
Query 302 GGAGATTCTGATGTTTCTGATGCTATAGCTGCACAGGTTCGCCGGTTGGCTATGGAGATT 361
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||
Sbjct 180 GGAGATTCTGATGTTTCTGATGCTATAGCTGCCCAGGTTCGTCGATTGGCTATGGAGGTT 239
Query 362 CGACAGCTAGCTTCGCAGCAACACATAACGGTCATGAATGGAGTTTCTGGTGCAAACCTA 421
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 240 CGACAGCTAGCTTCGCAGCAGCACATAACTGTCATGAATGGAGTTTCTGGTGCAAACCTA 299
Query 422 CAAGCCCTTGCTGTTCCTGCTGCGGCATTGGGAGCTCTCGGATATGGTTATATGTGGTGG 481
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGCCCTTGCTTTTCCTGCTGCGGCATTGGGAGCTCTCGGATATGGTTATATGTGGTGG 359
Query 482 AAGGGACTCTCATTCACTGACCTTATGTATGTGACAAAAGCCAACATGGCTGCTGCAGTG 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 AAGGGACTCTCATTCACTGACCTTATGTATGTGACAAAAGCCAACATGGCTGCTGCCGTG 419
Query 542 GCTAACTTGACAAAGAATCTGGAGCAAGTTTCTGAGACTCTTGCGGCTGCGAAAAGGCAT 601
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GCTAACTTGATAAAGAATCTGGAGCAAGTTTCTGAGACAGTTGCGGCTGCGAAAAGGCAT 479
Query 602 TTAACACAAAGGATTCAGAATCTGGATGATAAGGTAGAAAAGCAGATCGATCTCTCGAAG 661
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 480 TTAACACAAAGGATTCAGAATGTGGATGATAAGGTAGAAAAGCAGATTGATCTCTCCAAG 539
Query 662 GAAATCAATAGCCAGGTTATTTCTGCTCGTGAGAATATCAGCTCACTTGAGATGGATTTG 721
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||
Sbjct 540 GAAATCAATAGCCAGGTCATTGCTGCTCGTGAGAATATCAACTCACTTGAGATGGATTTG 599
Query 722 GAATCATTGCATAATTTGATTACTGGACTGGATGGGAAGTTGGACACGCTGGAATACAAG 781
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 GAATCATTGCATAATTTGATTACTGGACTGGATGGGAAGTTGGACACGCTAGAATACAAG 659
Query 782 CAGGATGTCACAAATGTTTTCATGCTAAACTTGTATAACTATTTTGGAGGCAAGAGCACA 841
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CAGGATGTCACAAATGTTTTCATGCTACACTTGTATAACTATTTTGGAGGCAAGAGCACA 719
Query 842 AAGCTGCCTGAAATGGAACAGCTTCAGCTTCCTGTAAACCAGAGGGCTCGTAATTTGCTT 901
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAACTGCCTGAAATGGAACAGCTTCAGCTTCCTGTAAACCAGAGGGCTCGTAATTTGCTT 779
Query 902 GCAGATGTTGAAACTAAGGGTCTGAAAAACTTGGCTGAAGAGCTGTTTAAAAGCAATGGC 961
|||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 780 GCAGATGTTGAAACCAAGGGTCTGAAAAACTTGACTGAAGAGCTGTTTGAAAGCAATGGC 839
Query 962 ACACAGGTGACAACCACAGTGAAACAAATCAGTTTGAGTAAAGTGAATGTGAAGTCGAGG 1021
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 840 GCACAGGTGACAACCACAGTGAAACAAATCAGTTTGAGTAAGGTCAATGTGAAGTCGAGG 899
Query 1022 CCATTGTTATCAAGGGCTGCTTCAGCTAAGTGTTGATATGGAAGTTTTCCTGATGGCGGT 1081
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 CCATTGTTATCAAGGGCTGCTTCAGCTAGGTGTTGATATGGAAGTTTTCCTGATGGCGGT 959
Query 1082 TTGGCTT 1088
|||||||
Sbjct 960 TTGGCTT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5