BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27008.1

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921530 jgi|Araly1|921530|scaffold_102811.1                        207    3e-53


> Ahg921530 jgi|Araly1|921530|scaffold_102811.1
Length=470

 Score =  207 bits (112),  Expect = 3e-53
 Identities = 157/178 (88%), Gaps = 6/178 (3%)
 Strand=Plus/Plus

Query  1    ATGACATCCCCTCCTTCTCCCTTCGCTATTTCCCCTGCAGCCGCCGTAGCAGCAGATTTG  60
            ||||| ||||||||||||| ||||||| ||| |||  ||||||||| ||||||| |||||
Sbjct  22   ATGACTTCCCCTCCTTCTCTCTTCGCTGTTT-CCC--CAGCCGCCGCAGCAGCAAATTTG  78

Query  61   CCTAATGACCCTGACCTGACCATCGTTGGTTTCTTGAAGTCACCAGATTCATTACCACTC  120
             || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  79   TCTGATGACCCTGACCTAACCATCGTTGGTTTCTTGAAGTCACCAGATTCGTTACCACTC  138

Query  121  TATCTCTTAATCGGAATGATCGTTTACACCGTCTCTATTCC-ACTACTGCAACTGCAG  177
            ||| || |||||| |||||||||||||| |||| | | ||| | ||||||||||||||
Sbjct  139  TATTTCCTAATCGCAATGATCGTTTACATCGTC-CAACTCCGA-TACTGCAACTGCAG  194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10073075496


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5