BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27020.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472699 jgi|Araly1|472699|fgenesh2_kg.1__2653__AT1G27020.1 1559 0.0
Ahg921528 jgi|Araly1|921528|scaffold_102809.1 965 0.0
Ahg921527 jgi|Araly1|921527|scaffold_102808.1 915 0.0
> Ahg472699 jgi|Araly1|472699|fgenesh2_kg.1__2653__AT1G27020.1
Length=1148
Score = 1559 bits (844), Expect = 0.0
Identities = 1024/1107 (93%), Gaps = 28/1107 (3%)
Strand=Plus/Plus
Query 76 CATGGGTTCTCTTGACTTGCCTTACGCTTCATCGTTCAAGGGAGGAAGTGAAACCTTTCT 135
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CATGGGTTCTCTTGATTTGCCTTACGCTTCATCGTTCAAGGGAGGAAGTGAAACATTTCT 60
Query 136 CCAGAATGTATTTGAAAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAGAC 195
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGAATGTGTTTGAAAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAGAC 120
Query 196 GATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCTCTTACGACCACTTCTTTTT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCTCTTACGACCACTTCTTTTT 180
Query 256 CAGGACATTTAAGGTCGATGGTTATGGAATTGATTCCCTGGCGAGTTTTTTCATGGATTA 315
||||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||
Sbjct 181 CAGGACATTTAAGGTTGATGGTTACGGAATTGATTCCTTGTCAAGTTTTTTCATGGATTA 240
Query 316 TGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTGGCT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTGGCT 300
Query 376 TTCTCCTCCGGATGTTCACTTCCCCGATAATGGTTACGGTATTGGCAATGGCCCTTTGCC 435
||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 301 TTCTCCTCCAGATATTCACGTCCCCGATAATGGTTATGGTATAGGCAATGGCCCTTTGCC 360
Query 436 AAGACTTGTTATAGCTGAGCTTCTTGTGGAGGAACTAAGCCCTGAGTCACAGGAGATAAT 495
| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 361 ACGACTTGTTATAGCTGAGCTTCTTGTGGATGAACTAAGCCATGAATCACAGGAGATAAT 420
Query 496 AAGGAAGTATTTGAAACCGGAAGGTGGTAAGCAAGCTGTTCTTTCAAGTACTTTGGGGTC 555
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 421 AAGGAAGTATTTGAAACCGGAAGGTGGTAAGCAAGCGGTTCTTTCAAGTACTTTGGGCTC 480
Query 556 TTTAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCCAAAGAAAGCGAATT 615
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TATAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCTAAAGAAAGCGAATT 540
Query 616 TGCCGCATGGACGCTTGTCTACGGCTACACAATGAACCATCTTGCTTTCGCGGTTCATCG 675
||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCGGCATGGACACTTGTCCACGGCTACACAATGAACCATCTTGCTTTCGCGGTTCATCG 600
Query 676 TCTTAAACACCGTTTCAGCGACATCAAATGCGTCAAAGAGTATTTTGAAGAAAACGGTTT 735
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 601 TCTTAAACACCGTTTCAGCGACATCAAATGTGTCAAAGAGTATTTTGAAGAAAATGGATT 660
Query 736 CGAACTCAACAAGGATGGAGGAGTCCTCAAAGTGAGTGAAGACAGTCTACTGTTACAAGT 795
|||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 661 CGAACTCAACAAGGATGGAGGAGTTCTCAAAGTGAGTCAAGATGGTCTACTGTTACAAGT 720
Query 796 GTCGGCTATGTCGGAGAAACTTGTGGTTGAATTTGCAGACGGAGTAACTCAAATCGTCCC 855
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 GTCGGCTATGTCAGAGAAGCTTGTGGTTGAATTTGCAGACGGAGTAACTCAAACCGTCCC 780
Query 856 GGCTTCATACATTGAGTTCGTTGAACGTCTAGTTCTTCCACAGTTCAAAGATATGCCGTG 915
||||| ||| |||||||| |||| ||||||||||| ||||||||||||||||||||| |
Sbjct 781 CGCTTCTTACGTTGAGTTCATTGACCGTCTAGTTCTCCCACAGTTCAAAGATATGCCGCG 840
Query 916 TGATGAGATCAAAGAGTTTCATAGACGCGAGGGCTTGGAGCAAGCTAGCGCCTACCACAT 975
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 841 TGATGAGATCAAAGAGCTTCATAGACGCGAGGGTTTAGAGCAAGCTAGCGCCTACCACAT 900
Query 976 AATGGAAAGCACCCGTTTCACAGCGTAAATATAGAACCAGCTTGTTTTGTTCCGCTCAAT 1035
|||||||||||||||||||||||| ||| | |||||||||||||| |||||| |||||||
Sbjct 901 AATGGAAAGCACCCGTTTCACAGCATAAGTGTAGAACCAGCTTGTCTTGTTCAGCTCAAT 960
Query 1036 ATGTCAAGTATGTGTACGTACTATTAAAATGTTTTGTATCTTATTTGGACAATTTGTGTG 1095
||||||||||||||||| | | | | | | | ||||| | |||||
Sbjct 961 ATGTCAAGTATGTGTAC-T--T-T------G----G-A-CA-ATTTG-A------GTGTG 996
Query 1096 TGAGATATTTCTGTTCTTGTGTTGTGAAGTGACGGTATAACTTAATATTACCCGTTACCG 1155
|||| ||| ||||||| | |||||||||||||||| | |||||||||| |||||||||
Sbjct 997 --AGATCTTTATGTTCTTCTCTTGTGAAGTGACGGTA-A-CTTAATATTAACCGTTACCG 1052
Query 1156 ACGAATAATGGAAAACAAAGTGTCATG 1182
|||||||||||||||||||||||||||
Sbjct 1053 ACGAATAATGGAAAACAAAGTGTCATG 1079
> Ahg921528 jgi|Araly1|921528|scaffold_102809.1
Length=974
Score = 965 bits (522), Expect = 0.0
Identities = 819/961 (85%), Gaps = 25/961 (3%)
Strand=Plus/Plus
Query 77 ATGGGTT-CTCTTGACTTGCCTTAC-GCTTCATCGTTCAAGGGAGGAAGTGAAACCTTTC 134
||||||| || ||||||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 22 ATGGGTTCCT-TTGACTTGCCTCACAG-TTCATCGTTCAAGGGAGGAAGTGAAACATTTC 79
Query 135 TCCAGAATGTATTTGA-AAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAG 193
| | |||||| || || || |||||||||||||||| | ||||||||||||| |||||||
Sbjct 80 TTCGGAATGTGTTCGAGAA-TATACTGAAAACGTATCTAAGGAAGAACCCGACGGCGAAG 138
Query 194 ACGATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCT-CTTACGACCACTTCTT 252
|||||||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||
Sbjct 139 ACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATCTGC-TACGACCACTTCAC 197
Query 253 TTTCAGGACATTTAAGGTCGATGGTTATGGAATTGATTCCCTGGCGAGTTTTTTCATGGA 312
|||||||||||| ||||||||||| |||||||| || ||| || ||||||||||||||||
Sbjct 198 TTTCAGGACATTAAAGGTCGATGGCTATGGAATAGACTCCTTGTCGAGTTTTTTCATGGA 257
Query 313 TTATGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTG 372
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||
Sbjct 258 TTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAACTACGAGTTCTTTG 317
Query 373 GCTTTCTCCTCCGGATGTTCACTTCCCCGATAATGGTTACGGTATTGGCAATGGCCCTTT 432
| ||||||| || ||||||||| |||| || | ||| ||||| | ||||| ||||||||
Sbjct 318 GTTTTCTCCACCCGATGTTCACGTCCCTAATGACGGTCACGGTCTAGGCAACGGCCCTTT 377
Query 433 GCCAAGACTTGTTATAGCTGAGCTTCTTGTGGAGGAACTAAGCCCTGAGTCACAGGAGAT 492
||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||
Sbjct 378 CCCACGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGAT 437
Query 493 AATAAGGAAGTATTTGAAACC-GGAAGGTGGTAAGCAAGCTGTTCTTTCAAGTACTTTGG 551
||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||
Sbjct 438 AATAAGGAAGTATTTGAAACCAGGT-GGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGG 496
Query 552 GGTCTTTAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCCAAAGAAAGCG 611
|||||||||| ||||||||||| |||| ||||| ||||| |||||||||||||||||||
Sbjct 497 GGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAACTTGCCAAAGAAAGCG 556
Query 612 AATTTGCCGCATGGACGCTTGTCTACGGCTACACAATGAACCATCTTGCTTTCGCGGTTC 671
|| |||| |||||||||||| || |||||||||||||||| ||||||||||| |||||||
Sbjct 557 AAATTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCATCTTGCTTTTGCGGTTC 616
Query 672 ATCGTCTT-AAACACCGTTTCAGCGACATCAAATGCGTCAAAGAGTATTTTGAAGAAAAC 730
|||| || ||||| |||||||| || ||||||| ||||||| || || |||| |||||
Sbjct 617 ATCGA-TTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAGCATCTTGAGGAAAAG 675
Query 731 GGTTTCGAACTCAACAAG-GATGGAGGAGTCCTCAAAGTGAGTGAAGACAGTCTACTGTT 789
|| | | ||||||||| | || |||| | |||||||||||||| |||| ||||||| ||
Sbjct 676 GGATACAAACTCAACA-GTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTATT 734
Query 790 ACAAGTGTCGGCTATGTCGGAGAAA-CTTGTGGTTGA-ATTTGCAGACGGAGTAACTCAA 847
||||| || | || ||||| || ||| ||| | ||||||||| ||||||||| ||
Sbjct 735 TCAAGTTTCATCGATCTCGGA-AAGGCTTCCGGTA-ACATTTGCAGATGGAGTAACTGAA 792
Query 848 ATCG-TCCCGGCTTCATACATTGAGTTCGTTGAACGTCTAGTTCTTCCACAGTTCAAAGA 906
| | |||| |||||||||||||||||| | |||||| |||||||||| ||||||||||
Sbjct 793 A-CAATCCCAGCTTCATACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAGTTCAAAGA 851
Query 907 TATGCCGTGTGATGAGATCAAAGAGTTTCATAGACGCGAGGGCTTG-GAGCAAGCTAGCG 965
| ||||| ||||||||||||||| ||||||||||| || | ||| || | | || ||
Sbjct 852 TGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAG-CTTTTGAACTCGATAACG 910
Query 966 CCTACCACATAATGGAAAGCACCCGTTTCACAGCGTAAATA-TAGAACCAG-CTTGTTTT 1023
|| ||||| ||||||||||||||||||||||| | |||| ||||||||| ||||| ||
Sbjct 911 CCAACCACGTAATGGAAAGCACCCGTTTCACAACC-AAATTCTAGAACCAGACTTGTCTT 969
Query 1024 G 1024
|
Sbjct 970 G 970
> Ahg921527 jgi|Araly1|921527|scaffold_102808.1
Length=974
Score = 915 bits (495), Expect = 0.0
Identities = 812/963 (84%), Gaps = 29/963 (3%)
Strand=Plus/Plus
Query 77 ATGGGTT-CTCTTGACTTGCCTTAC-GCTTCATCGTTCAAGGGAGGAAGTGAAACCTTTC 134
||||||| || ||||||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 22 ATGGGTTCCT-TTGACTTGCCTCACAG-TTCATCGTTCAAGGGAGGAAGTGAAACATTTC 79
Query 135 TCCAGAATGTATTTGA-AAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAG 193
| | |||||| || || || |||||||||||||||| | ||||||||||| | |||||||
Sbjct 80 TTCGGAATGTGTTCGAGAA-TATACTGAAAACGTATCTAAGGAAGAACCCAACGGCGAAG 138
Query 194 ACGATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCT-CTTACGACCACTTCTT 252
|||||||||||||| ||| ||||| |||||||||||||||| | | ||||||||||||
Sbjct 139 ACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATATGC-TACGACCACTTCAC 197
Query 253 TTTCAGGACATTTAAGGTCGATGGTTATGGAATTGATTCCCTGGCGAGTTTTTTCATGGA 312
|||||||||| | |||||||||||||||||||| || ||| || ||||||||||||||||
Sbjct 198 TTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTGTCGAGTTTTTTCATGGA 257
Query 313 TTATGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTG 372
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||
Sbjct 258 TTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAACTACGAGTTCTTTG 317
Query 373 GCTTTCTCCTCCGGATGTTCACTTCCCCGATA-ATGGTTACGGTATTGGCAATGGCCCTT 431
| |||||||||| ||||| ||| |||| | | | || ||||| | |||||||||| ||
Sbjct 318 GTTTTCTCCTCCCGATGTCCACGTCCCTAA-AGACGGCCACGGTCTAGGCAATGGCCTTT 376
Query 432 TGCCAAGACTTGTTATAGCTGAGCTTCTTGTGGAGGAACTAAGCCCTGAGTCACAGGAGA 491
|||| || |||||||||||||| |||||||||| |||||||||||||| ||||||| ||
Sbjct 377 TGCCGCGAATTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGA 436
Query 492 TAATAAGGAAGTATTTGAAACCGGAAGGTGGTAAGCAAGCTGTTCTTTCAAGTACTTTGG 551
|||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||
Sbjct 437 TAATAAGGAAGTATTTGAAACCAGAAGGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGG 496
Query 552 GGTCTTTAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCCAAAGAAAGCG 611
||||||||| ||||||||||| |||| | || ||||| |||||||||||||||||||
Sbjct 497 AGTCTTTAATATGGGAGAAGCCTACATGGATTGACTTCAAGCAACTTGCCAAAGAAAGCG 556
Query 612 AATTTGCCGCATGGACGCTTGTCTACGGCTACACAATGAACCATCTTGCTTTCGCGGTTC 671
|| |||| |||||||||||| || ||||||||||| |||| ||||||||||| |||||||
Sbjct 557 AAATTGCGGCATGGACGCTTATCCACGGCTACACACTGAATCATCTTGCTTTTGCGGTTC 616
Query 672 ATCGTCTT-AAACACCGTTTCAGCGACATCAAATGCGTCAAAGAGTATTTTGAAGAAAAC 730
|||| || ||||| |||||||| || ||||||| ||||||| | || ||||||||||
Sbjct 617 ATCGA-TTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAACATCTTGAAGAAAAG 675
Query 731 GGTTTCGAACTCAACAAG-GATGGAGGAGTCCTCAAAGTGAGTGAAGACAGTCTACTG-T 788
|| ||| ||||||||| | || |||| | |||||||||||||| |||| |||||||| |
Sbjct 676 GGATTCAAACTCAACA-GTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTGCT 734
Query 789 TACAAGTGTCGGCTATGTCGGAGAAA-CTTGTGGTTGA-ATTTGCAGACGGAGTAACTCA 846
| ||||| || | || ||||| || ||| ||| | ||||||||| ||||||||| |
Sbjct 735 T-CAAGTTTCATCGATCTCGGA-AAGGCTTCCGGTA-ACATTTGCAGATGGAGTAACTGA 791
Query 847 AATCG-TCCCGGCTTCATACATTGAGTTCGTTGAACGTCTAGTTCTTCCACAGTTCAAAG 905
|| | |||| ||||| |||||||||||| | |||||| |||||||||| |||||||||
Sbjct 792 AA-CAATCCCAGCTTCGTACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAGTTCAAAG 850
Query 906 ATATGCCGTGTGATGAGATCAAAGAGTTTCATAGACGCGAGGGCTTG-GAGCAAGCTAGC 964
|| ||||| ||||||||||||||| ||||||||||| || | ||| || | | || |
Sbjct 851 ATGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAG-CTTTTGAACTCGATAAC 909
Query 965 GCCTACCA-CATAATGGAAAGCACCCGTTTCACAGCGTAAATA-TAGAACCAG-CTTGTT 1021
||| | || ||||||||||||||||||||||||| | |||| |||| |||| |||||
Sbjct 910 GCC-AGCAACATAATGGAAAGCACCCGTTTCACAACC-AAATTCTAGAGCCAGACTTGTC 967
Query 1022 TTG 1024
|||
Sbjct 968 TTG 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5