BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27030.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921528 jgi|Araly1|921528|scaffold_102809.1 1633 0.0
Ahg921527 jgi|Araly1|921527|scaffold_102808.1 1544 0.0
Ahg494886 jgi|Araly1|494886|fgenesh2_kg.8__702__AT1G27030.1 1286 0.0
> Ahg921528 jgi|Araly1|921528|scaffold_102809.1
Length=974
Score = 1633 bits (884), Expect = 0.0
Identities = 944/974 (97%), Gaps = 0/974 (0%)
Strand=Plus/Plus
Query 19 TTTCTCAGAAACAACTCAAACATGGGTTCCTTCGACTTGCCTCACAGTTCATCGTTCAAG 78
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TTTCTCAGAAACAACTCCAAGATGGGTTCCTTTGACTTGCCTCACAGTTCATCGTTCAAG 60
Query 79 GGAGAAAGTGAAATATTTCTTCGGAATGTGTTCGAGAATATATTGAAAACGTACCTAAGG 138
|||| |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 GGAGGAAGTGAAACATTTCTTCGGAATGTGTTCGAGAATATACTGAAAACGTATCTAAGG 120
Query 139 AAGAACCCGACGGCGAAGACAATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATC 198
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGAACCCGACGGCGAAGACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATC 180
Query 199 TGCTACGACCACTTCACTTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTG 258
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 181 TGCTACGACCACTTCACTTTCAGGACATTAAAGGTCGATGGCTATGGAATAGACTCCTTG 240
Query 259 TCGAGTTTTTTCATGGCTTATGGATATAAAATTGGTGGTGGACTTGATTTTCCCAAGAAG 318
|||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 TCGAGTTTTTTCATGGATTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAG 300
Query 319 AAACTACGAGTTCTTTGGTTTTCTCCACCTGATGTTCACGTTCCTAATGATGGTCACGGT 378
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 301 AAACTACGAGTTCTTTGGTTTTCTCCACCCGATGTTCACGTCCCTAATGACGGTCACGGT 360
Query 379 CTAGGCAACGGCCCTTTGCCGCGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGC 438
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTAGGCAACGGCCCTTTCCCACGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGC 420
Query 439 CCTGAATCACAGGGGATAATAAGGAAGTATTTGAAACAAGAAGGTGGCAAGCAAGCGGTT 498
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 CCTGAATCACAGGGGATAATAAGGAAGTATTTGAAACCAGGTGGTGGCAAGCAAGCGGTT 480
Query 499 CTTTCTAGTACTTTGGGGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAG 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTTCTAGTACTTTGGGGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAA 540
Query 559 CTTGCCAAAGAAAGCGAATTTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCAT 618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTGCCAAAGAAAGCGAAATTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCAT 600
Query 619 CTTGCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGACATCAAATTCGTCAAACAG 678
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CTTGCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAG 660
Query 679 CGTCTTGAGGAAAAGGGATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAA 738
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CATCTTGAGGAAAAGGGATACAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAA 720
Query 739 GATGGTCTACTATTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATGGTCTACTATTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGAT 780
Query 799 GGAGTAACTGAAACAATCCCAGCTTCATACATTGAATTCACTCAGCGTCAAGTTCTTCCA 858
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 781 GGAGTAACTGAAACAATCCCAGCTTCATACATTGAGTTCACTCAACGTCAAGTTCTTCCA 840
Query 859 GAGTTCAAAGATGTGCCGCTTGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAA 918
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGTTCAAAGATGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAA 900
Query 919 CTCGATAACGCCAACCACGTAATGGAAAGCACCCGTTTCACAACTAAATTCTAGAACCAG 978
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 CTCGATAACGCCAACCACGTAATGGAAAGCACCCGTTTCACAACCAAATTCTAGAACCAG 960
Query 979 ACTTGTCTTGCTCG 992
||||||||||||||
Sbjct 961 ACTTGTCTTGCTCG 974
> Ahg921527 jgi|Araly1|921527|scaffold_102808.1
Length=974
Score = 1544 bits (836), Expect = 0.0
Identities = 926/971 (95%), Gaps = 0/971 (0%)
Strand=Plus/Plus
Query 22 CTCAGAAACAACTCAAACATGGGTTCCTTCGACTTGCCTCACAGTTCATCGTTCAAGGGA 81
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4 CTCAGAAACAACTCCAAGATGGGTTCCTTTGACTTGCCTCACAGTTCATCGTTCAAGGGA 63
Query 82 GAAAGTGAAATATTTCTTCGGAATGTGTTCGAGAATATATTGAAAACGTACCTAAGGAAG 141
| |||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 64 GGAAGTGAAACATTTCTTCGGAATGTGTTCGAGAATATACTGAAAACGTATCTAAGGAAG 123
Query 142 AACCCGACGGCGAAGACAATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATCTGC 201
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 124 AACCCAACGGCGAAGACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATATGC 183
Query 202 TACGACCACTTCACTTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTGTCG 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TACGACCACTTCACTTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTGTCG 243
Query 262 AGTTTTTTCATGGCTTATGGATATAAAATTGGTGGTGGACTTGATTTTCCCAAGAAGAAA 321
||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 244 AGTTTTTTCATGGATTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAA 303
Query 322 CTACGAGTTCTTTGGTTTTCTCCACCTGATGTTCACGTTCCTAATGATGGTCACGGTCTA 381
||||||||||||||||||||||| || ||||| ||||| ||||| || || |||||||||
Sbjct 304 CTACGAGTTCTTTGGTTTTCTCCTCCCGATGTCCACGTCCCTAAAGACGGCCACGGTCTA 363
Query 382 GGCAACGGCCCTTTGCCGCGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCT 441
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGCAATGGCCTTTTGCCGCGAATTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCT 423
Query 442 GAATCACAGGGGATAATAAGGAAGTATTTGAAACAAGAAGGTGGCAAGCAAGCGGTTCTT 501
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 424 GAATCACAGGGGATAATAAGGAAGTATTTGAAACCAGAAGGTGGCAAGCAAGCGGTTCTT 483
Query 502 TCTAGTACTTTGGGGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAGCTT 561
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 484 TCTAGTACTTTGGAGTCTTTAATATGGGAGAAGCCTACATGGATTGACTTCAAGCAACTT 543
Query 562 GCCAAAGAAAGCGAATTTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCATCTT 621
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 544 GCCAAAGAAAGCGAAATTGCGGCATGGACGCTTATCCACGGCTACACACTGAATCATCTT 603
Query 622 GCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGACATCAAATTCGTCAAACAGCGT 681
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 604 GCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAACAT 663
Query 682 CTTGAGGAAAAGGGATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGAT 741
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTTGAAGAAAAGGGATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGAT 723
Query 742 GGTCTACTATTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGGA 801
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GGTCTACTGCTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGGA 783
Query 802 GTAACTGAAACAATCCCAGCTTCATACATTGAATTCACTCAGCGTCAAGTTCTTCCAGAG 861
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 784 GTAACTGAAACAATCCCAGCTTCGTACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAG 843
Query 862 TTCAAAGATGTGCCGCTTGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTC 921
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TTCAAAGATGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTC 903
Query 922 GATAACGCCAACCACGTAATGGAAAGCACCCGTTTCACAACTAAATTCTAGAACCAGACT 981
|||||||||| | || ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 904 GATAACGCCAGCAACATAATGGAAAGCACCCGTTTCACAACCAAATTCTAGAGCCAGACT 963
Query 982 TGTCTTGCTCG 992
|||||||||||
Sbjct 964 TGTCTTGCTCG 974
> Ahg494886 jgi|Araly1|494886|fgenesh2_kg.8__702__AT1G27030.1
Length=1068
Score = 1286 bits (696), Expect = 0.0
Identities = 878/961 (91%), Gaps = 31/961 (3%)
Strand=Plus/Plus
Query 276 TTATGGATATAAAATTGGTGGTGGACTTGATTTTCCCAAGAAGAAACTACGAGTTCTTTG 335
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAACTACGAGTTCTTTG 179
Query 336 GTTTTCTCCACCTGATGTTCACGTTCCTAATGATGGTCACGGTCTAGGCAACGGCCCTTT 395
||||||||| || ||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct 180 GTTTTCTCCTCCCGATGTCCACGTCCCTAAAGATGGTCACGGTCTAGGCAATGACCCTTT 239
Query 396 GCCGCGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGAT 455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCCGCGAATTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGAT 299
Query 456 AATAAGGAAGTATTTGAAACAAGAAGGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGGG 515
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATAAGGAAGTATTTGAAACCAGAAGGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGGA 359
Query 516 GTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAGCTTGCCAAAGAAAGCGA 575
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 360 GTCTTTAATATGGGAGAAGCCTACATGGACCGAG--CAA-C---TTGCCAAAGAAAGCGA 413
Query 576 ATTTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCATCTTGCTTTTGCGGTTCA 635
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 414 AATTGCGGCATGGACGCTTATCCACGGCTACACACTGAATCATCTTGCTTTTGCGGTTCA 473
Query 636 TCGATTCAAACATCGTTTCAGTGACATCAAATTCGTCAAACAGCGTCTTGAGGAAAAGGG 695
|||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||
Sbjct 474 TCGATTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAACATCTTGAAGAAAAGGG 533
Query 696 ATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTATTTCA 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 534 ATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTGCTTCA 593
Query 756 AGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGGAGTAACTGAAACAAT 815
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 AGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGAAGTAACTGAAACAAT 653
Query 816 CCCAGCTTCATACATTGAATTCACTCAGCGTCAAGTTCTTCCAGAGTTCAAAGATGTGCC 875
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 654 CCCAGCTTCGTACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAGTTCAAAGATGTGCC 713
Query 876 GCTTGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTCGATAACGCCAACCA 935
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 714 GCATGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTCGATAACGCCAGCAA 773
Query 936 CGTAATGGAAAGCACCCGTTTCACAACTAAATTCTAGAACCAGACTTGTCTTGCTCGACT 995
| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 774 CATAATGGAAAGCACCCGTTTCACAACCAAATTCTAGAGCCAGACTTGTCTTGCTCGACT 833
Query 996 TAGTATATGCCAAATTtgtg-caactatatatgtgagtgtgtg---t-ttgtgtgcaatc 1050
| ||||| |||||||||| || |||| |||||| |||||| | || | | | |
Sbjct 834 AA--ATATGTCAAATTTGTGTCA-CTATTTATGTGTTTGTGTGCAATCTTATTTATA-TA 889
Query 1051 tttccatatatatgc---a-t-gtg-tgtat-TT-GCGATATCTTTATGTTGTTATTTTA 1102
| | |||||||||| | | ||| ||| | || ||||||||||||||||||||| |||
Sbjct 890 TAT--ATATATATGCGTGAATCGTGATGTGTCTTTGCGATATCTTTATGTTGTTATGTTA 947
Query 1103 CTGTGAAGGGACAATG--T-AAG-CAT--ATGTTATCTCTCATGATGGTAATTGTTGATT 1156
|||||||| |||||| | || ||| || ||||||||||||||||| |||||||||
Sbjct 948 CTGTGAAGTGACAATTACTTAAAACATTTATATTATCTCTCATGATGGTTATTGTTGATA 1007
Query 1157 AGAGTGACCAACTTGTAAAATGGATCACATGATTGACGAATCATGGGAAATAAAATGTAT 1216
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1008 AGAGTGACCAACTTGTCAAATGGATCACATTATTGACGAATCATGGGAAATAAAATGTAT 1067
Query 1217 T 1217
|
Sbjct 1068 T 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5