BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27040.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574 1280 0.0
Ahg926293 jgi|Araly1|926293|scaffold_201854.1 538 5e-152
> Ahg912320 jgi|Araly1|912320|Al_scaffold_0001_2574
Length=1737
Score = 1280 bits (693), Expect = 0.0
Identities = 780/823 (95%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 25 ATGGAAGTAGAAATGCATGGTGATGTCTCCAAATGGGAAGGCTACGCTGACTGGAGAAAC 84
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAAGTAGAAGTGCAAGGTGATGTCTCCAAATGGGAAGGCTACGCTGACTGGAGGAAC 60
Query 85 AAAGCCGCCTTGAGAGGCCGTCACGGCGGAATGCTCGCCGCCTCCTTCGTCTTGGCGGTG 144
| ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 AGAGCCGCCGTGAAAGGCCGTCACGGCGGCATGCTTGCCGCCTCCTTCGTCTTGGCGGTG 120
Query 145 GAGATATTGGAGAATCTAGCGTTTTTAGCGAACGCAAGCAACTTGGTGTTGTATCTCAAG 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GAGATATTGGAGAATCTAGCGTTTTTAGCGAACGCAAGCAACTTGGTGTTGTATCTGAAG 180
Query 205 AACTTCATGCACATGTCTCTAGCCAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACA 264
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AACTTCATGCACATGTCTCTAGCGAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACC 240
Query 265 GCCTTCCTTCTCGCTCTCCTCGGTGGCTTCCTTGCTGACGCCTTCTTCTCCACATTCGTC 324
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 GCCTTCCTTCTCGCTCTCCTCGGTGGCTTCCTCGCCGACGCCTTCTTCTCCACATTCGTC 300
Query 325 ATTTTCCTCATCTCCGCCTCCATCGAGTTTCTGGGACTTATCCTGCTCACAATCCAAGCC 384
|| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCTTCCTCGTCTCCGCCTCCATTGAGTTTCTGGGACTTATCCTGCTCACAATCCAAGCC 360
Query 385 CGGCGTCCGTCCTTAATGCCGCCGCCATGCAAGAGCTCTGCCGCATTGCGATGCGAGGTC 444
|| |||||||| ||||||||||| ||||||||||||||||| || || | ||||||||||
Sbjct 361 CGTCGTCCGTCTTTAATGCCGCCTCCATGCAAGAGCTCTGCGGCGTTACCATGCGAGGTC 420
Query 445 GTTGGTGGTTCGAAGGCGGCGTTTCTGTTTGTGGGACTATATCTAGTGTCTCTAGGAATC 504
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 421 GTTGGTGGTTCAAAGGCGGCGTTTCTGTTCGTGGGATTATATCTAGTGTCTCTAGGAGTC 480
Query 505 GGAGGGATAAAAGGGTCATTACCGTCACACGGAGCAGAGCAATTCGACGAGGGCACGCCC 564
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 481 GGAGGGATAAAAGGGTCATTGCCGTCACACGGAGCAGAGCAATTCGACGAGAGCACGCCT 540
Query 565 AAAGGTCGAAAACAAAGATCCACATTCTTCAACTACTATGTGTTCTGTCTCTCATGTGGA 624
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGGTCGAAAACAGAGATCCACCTTCTTCAACTACTATGTGTTCTGTCTCTCATGTGGA 600
Query 625 GCACTTGTGGCCGTGACGTTCGTTGTCTGGATCGAGGACAACAAAGGCTGGGAGTGGGGA 684
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 GCACTTGTGGCCGTGACGTTCGTTGTCTGGCTCGAGGACAACAAAGGCTGGGAGTGGGGA 660
Query 685 TTTGGAGTCTCCACCATCTCTATATTTCTCTCCATTCTTGTCTTTCTATTAGGTTCGAGG 744
|||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct 661 TTTGGAGTCTCCACCATCTCCATATTTCTCTCCATTATCGTCTTTCTCTTAGGTTCGAGG 720
Query 745 TTTTATAA-AAACAAAATCCCTCGTGGTAGTCCTCTTACCACAATCTTTAAGGTTCTTCT 803
|||||||| ||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 721 TTTTATAAGAAA-AAAATCCCTCGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTCT 779
Query 804 CGCAGCTTCCATAGTTAGTTGCTCGAGTAAAACTTCGAGTAAT 846
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 CGCAGCTTCCATAGTTGGTTGCTCGAGTAAAACTTCGAGTAAT 822
Score = 1240 bits (671), Expect = 0.0
Identities = 811/880 (92%), Gaps = 4/880 (0%)
Strand=Plus/Plus
Query 843 TAATCACTTTACTTCCAGAGAAGTTCAATCAGAAC-ATGAAGAAAAGACGCCTTCTCAGT 901
|||||||||| |||| ||||||| ||||||||||| | ||| ||||||||||||||||||
Sbjct 852 TAATCACTTTGCTTCTAGAGAAGATCAATCAGAACAAGGAA-AAAAGACGCCTTCTCAGT 910
Query 902 CACTTACCAATAGCTTGACATGTCTAAACAAAGCAATAGAGGGGAAAACACACCATATTT 961
|||| || |||||||||| ||||||||||| ||| |||||||| ||||||||| |||| |
Sbjct 911 CACTAACTAATAGCTTGAGATGTCTAAACAGAGCGATAGAGGGCAAAACACACTATATAT 970
Query 962 GGCTCGAATGCACGGTCCAACAAGTAGAAGACGTGAAGATTGTGCTAAAAATGCTTCCAA 1021
||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |
Sbjct 971 GGCTCGAATGCACAGTCCAACAAGTGGAAGACGTGAAGATTGTCCTGAAAATGCTTCCGA 1030
Query 1022 TATTTGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTACTTACTCTGTCC 1081
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1031 TATTTGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAACTCTCTACTTACTCTGTCC 1090
Query 1082 ACCAAGCTGCAACGATGAACAGAAAGATCGTTAACTTCAATGTTCCTTCAGCTTCTTTAC 1141
|||||||||| |||||||||||||||||| ||||||| ||| ||||| ||||||| ||||
Sbjct 1091 ACCAAGCTGCTACGATGAACAGAAAGATCATTAACTTTAATATTCCTCCAGCTTCCTTAC 1150
Query 1142 CGGTTTTTCCGGTTGTTTTCATGCTGATTCTTGCTCCAACCTATGACCATCTGATTATCC 1201
|||||||||| || || |||||||| || |||||||| |||||||||||||||||||||
Sbjct 1151 CGGTTTTTCCAGTCGTATTCATGCTAATGCTTGCTCCGGCCTATGACCATCTGATTATCC 1210
Query 1202 CATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTATCACTCATTTGCAAAGAATCGGTG 1261
||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1211 CATTCGCTAGAAAGGTAACCAAATCCGAAATGGGTATCACTCACTTGCAAAGAATCGGTG 1270
Query 1262 TAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCGAGTTAAAGCGGA 1321
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1271 TAGGCTTAGTCCTTTCGATATTAGCAATGGCAGTGGCTGCATTAGTCGAGTTAAAGCGGA 1330
Query 1322 AGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTGAAGAAACTTTACCAATCACTTTTC 1381
||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
Sbjct 1331 AGCAAGTAGCTAGAGAAGCTGGATTGCTTGACTCTAAAGAAACCTTACCAATCACTTTCC 1390
Query 1382 TGTGGATTGC-TCTTCAGTATCTGTTTCTAGGATCAGCTGATCTGTTCACACTAGCTGGA 1440
| |||||||| | |||||||||| |||||||| ||||||||||| |||||| ||||||||
Sbjct 1391 TATGGATTGCGT-TTCAGTATCTATTTCTAGGGTCAGCTGATCTATTCACATTAGCTGGA 1449
Query 1441 TTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCATTGGCTACATCGCTC 1500
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1450 TTGCTGGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCATTAGCTACATCGCTC 1509
Query 1501 TCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGTGCCGATAGTGAAC 1560
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1510 TCATGGGCTTCTTTAGCATTGGGGTATTATCTAAGCTCGGTGATGGTTCCGATAGTGAAC 1569
Query 1561 AGAGTAACTAAGAGTGCTGGACAAAGCCCATGGCTTGGAGAAAAACTTAACCGTAACAGA 1620
|| || ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1570 AGTGTCACTGAGAGTGCCGGACAAAGCCCATGGCTTGGAGAAAAACTTAACCGTAGCAGC 1629
Query 1621 CTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACTTCTTGCACTATCTC 1680
|||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1630 CTAGACTTGTTTTACTGGCTCATGTGTGTCATGAGTGTTGTTAACTTCTTGCATTATCTC 1689
Query 1681 TTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTCAA 1720
||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1690 TTCTGGGCAAAGCGTTATAAGTACATCTCAACTGGTTCAA 1729
> Ahg926293 jgi|Araly1|926293|scaffold_201854.1
Length=1743
Score = 538 bits (291), Expect = 5e-152
Identities = 618/772 (80%), Gaps = 38/772 (5%)
Strand=Plus/Plus
Query 967 GAATGCACGGTCCAACAAGTAG-AAGACGTGAAGATTGTGCTAAAAATGCTTCCAATATT 1025
|||||||| ||||||||||| | |||||||||| |||| || ||||||||||| |||||
Sbjct 960 GAATGCACAGTCCAACAAGT-GCGAGACGTGAAG-TTGTCCTGAAAATGCTTCCGATATT 1017
Query 1026 TGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTAC-TTACTCTGTCCACC 1084
|| |||||| || ||||| || || |||||||||||||| ||||| || ||| ||||| |
Sbjct 1018 TGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATT-CTCCGTCCAAC 1076
Query 1085 AAGCTGCAACGATGAACAGAAAGATCGTTAA-CTTCAATG-TTCCTTCAGCTTCTTTACC 1142
||||||| | ||||||| |||||| | || | | || | ||||| ||||||| |||||
Sbjct 1077 AAGCTGCTTCTATGAACACAAAGATAG-GAAGCCT-AAAGATTCCTCCAGCTTCCTTACC 1134
Query 1143 GGTTTTTCCGGTTGTTTTCATGC-TGATTCTTGCTCCAACCTATGACCATCTGATTATCC 1201
| || || || |||||||| | |||| || || || | ||| |||||||| ||||| |
Sbjct 1135 CATCTTCCCCGTCGTTTTCAT-CATGATCCTCGCACCTATCTACGACCATCTCATTATTC 1193
Query 1202 CATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTA-TCACTCATTTGCAAAGAATCGGT 1260
||||||| ||||| | ||||||| | |||| || | | |||||||| |||||||||||
Sbjct 1194 CATTCGCTAGAAAGGCAACCAAAACAGAAA-CGGGAGTAACTCATTTACAAAGAATCGGA 1252
Query 1261 GTAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCG-AGTTAAAGCG 1319
||||| ||||| ||||||||| |||||||||| || || ||| | || | | | ||| ||
Sbjct 1253 GTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA-CG 1311
Query 1320 GAAGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTG-AAGAAACTTTACCAATCACTT 1378
|||| |||||| | ||| | || ||||||||||| | ||||||| ||||| ||||||
Sbjct 1312 GAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTC-GAAAGAAACCTTACCCGTCACTT 1370
Query 1379 TTCTGTGGATTGCTCTTCAGTATCTGTTT-CTAGGATCAGCTGATCTGTTCACACTAGCT 1437
| || ||||| || ||||| ||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 1371 TCCTATGGATCGCGCTTCAATATCT-TTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429
Query 1438 GGATTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCAT-TGGCTACATC 1496
||| | |||||| ||||||||| ||||||||| | ||||||||||| | | || |||||
Sbjct 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATC-TCTAGCGACATC 1488
Query 1497 GCTCTCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGT-GCCGATAG 1555
|||||| |||||||| |||||| | |||||||| |||||||| ||||| || || ||||
Sbjct 1489 GCTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCC-ATAG 1547
Query 1556 TGAACAG-AGTAACTAAG-AG-TGCTGGACAA-AGC-CCATGGCTTGGA-GAAAAA-C-T 1607
| ||||| | | || | | || | | || ||| | | || ||||| || |||||| | |
Sbjct 1548 TAAACAGCA-TCAC-AGGAAGCT-CAGG-CAACA-CACCTTGGCTCAGAGGAAAAAGCAT 1602
Query 1608 TAACCG-TAACAGACTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACT 1666
||||| | ||| ||| |||| || |||||||| |||||||| || |||| | |||||
Sbjct 1603 AAACCGCT-ACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACT 1661
Query 1667 TCTTGCACTATCTCTTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTC 1718
|||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1662 TCTTGCACTATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTC 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5