BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27050.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912319 jgi|Araly1|912319|Al_scaffold_0001_2573 883 0.0
> Ahg912319 jgi|Araly1|912319|Al_scaffold_0001_2573
Length=1374
Score = 883 bits (478), Expect = 0.0
Identities = 581/631 (92%), Gaps = 6/631 (1%)
Strand=Plus/Plus
Query 7 AAGTTCGAGTATGAGCCGCAAGAGAGATAAACCCTACACAAACCGTCACACACCGGCGCG 66
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 747 AAGTACGAGTATGAGCCGCAAGAGAGATAAACCCTACACATATCGTCACACACCGGCGCG 806
Query 67 AATTTCGAAACGCCGGCGACCATGGGCGCCTTCGTCATCGGAGCACGATGAGATTATCGA 126
||||||||||||||||||||||||||||||| |||||| || |||||||| || |||||
Sbjct 807 AATTTCGAAACGCCGGCGACCATGGGCGCCTCCGTCATTTGAACACGATGAAATCATCGA 866
Query 127 CAAACCGATCACCAAACCTCCGCCGCCACCGGCGTTGGTAGTTAT-GGGACTTCCCGCCA 185
|||||| || |||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 867 CAAACCAATTACCAAACCTCCGCCGCCACCGGCGCTGGTAGTTACAGGG-CTTCCCGCCA 925
Query 186 ACTGTTCAGTTCTGGAGCTAAAATCTCGATTCGAGATCTACGGTTCAATCTCCCGAATCC 245
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 926 ACTGTTCAGTCCTGGAGCTAAAATCTCGATTCGAGATCTACGGTTCAATCTCCAGAATCC 985
Query 246 GAATCCATAAAGACGGAATTGGCTCCGTTTCGTATCGAACCGCCGAGTCAGCAGAAGCCG 305
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct 986 GAATCGATAAAGACGGATTTGGCTCCGTTTCGTATCGAACCACCGAGTCAGCAGAAGCTG 1045
Query 306 CCATTGCTGGTAGTCACGAGCCTTCTTTCGGTATCTCCATCGATTCCAAAAAGTTGGAGG 365
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1046 CGATTGCTGGTAGTCACGAGCCTTCTTTCGGTATCTCCATCGATTCCAAAAAGTTGGTGG 1105
Query 366 TGGTTTGGGCGACGGATCCATTGGTGAAGTGGAAGGAAGGTGTGACGGCGGGAGAAGGAA 425
||| ||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||
Sbjct 1106 TGGGTTGGGCGACGGATCCGTTGGTGAAGTGTAGGGAAGGTGTGACGGTTGGAGAAGGAA 1165
Query 426 AGGAGAGAACGTCGTCGTTTTCGTCGAAGCTTTTACGACCTGTGATGCCTTTGAGAAAAC 485
|||| | ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1166 AGGATAAAACGTTGTCGTCTTCGTCGAAGCTGTTACGACCTGTGATGCCTTTGAGAAAAC 1225
Query 486 ATGGGAGAAGCAGTAGGTTAGCGTCAGCTATTGTTAATCCGAGAAGTGATAATACTAAAG 545
| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1226 ACGGGAGAAGCAGTAGATTAGCATCAGCTATTGTTAATCCGAGAAGTGATAATACTAACG 1285
Query 546 GAATTAGTGGAGATGGAGG-GATATCATCTCCGGCGACGACAA-GTGAAGTTAAACAGAG 603
|||||||||||| ||| || | | | | |||||||||||| || | ||||||||||||||
Sbjct 1286 GAATTAGTGGAGGTGGCGGAGTTTTGA-CTCCGGCGACGATAAAG-GAAGTTAAACAGAG 1343
Query 604 AAATATAGTAACCTACGACGATATCGTTTAA 634
| ||||||||||||||||||||||| |||||
Sbjct 1344 AGATATAGTAACCTACGACGATATCCTTTAA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5