BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27060.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921522 jgi|Araly1|921522|scaffold_102803.1 1738 0.0
> Ahg921522 jgi|Araly1|921522|scaffold_102803.1
Length=1211
Score = 1738 bits (941), Expect = 0.0
Identities = 1078/1146 (94%), Gaps = 2/1146 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAACACGGTGAGACTCAAGCTGATGAAGAAGAAGAAGAACAAGTATGGAGCTGG 60
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 21 ATGGCCGAACACGGTGAGACTCAAGCTGATGAAGAAGAAGAACAGCAAGTATGGAGCTGG 80
Query 61 GGTGCTGGTACGGACGGACAGTTAGGGACGACAAAGCTGCAAGACGAGCTTCTTCCGCAG 120
|| ||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||
Sbjct 81 GGAGCTGGTACGGACGGACAGTTAGGTACGGCTAAGCTGCAAGACGAGCTTCTCCCGCAG 140
Query 121 CTTCTCTCTCTGACATCACTTCCTTCCATATCAATGCTCGCTTGTGGCGGCGCTCACGTC 180
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 141 CTTCTCTCTCTGACGTCACTTCCTTCCATATCTATGCTCGCCTGTGGCGGCGCTCACGTC 200
Query 181 ATCGCTTTGACTTCTGGTGGTAAAGTCTTCACATGGGGAAGAGGAAGCTCTGGTCAGTTA 240
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 201 ATCGCTTTGACTTCTGATGGGAAGGTCTTCACATGGGGAAGAGGAAGCTCTGGTCAGTTA 260
Query 241 GGACATGGAGACATCCTCAACATTACTTTGCCAAAGCTTGTATCTTTCTTTGACGACTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 261 GGACATGGAGACATCCTCAACATTACTTTGCCAAAGCTTGTATCTTTCTTTGACGGCTAT 320
Query 301 GTTATTACTCAAGCTGCTGCTGGATGGAGTCATTCTGGTTTTGTTTCAGATTCTGGTTGT 360
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GTTATTACTCAAGCCGCAGCTGGATGGAGTCATTCTGGTTTTGTTTCAGATTCTGGTTGT 380
Query 361 ATTTTCACATGTGGCAATGGCTCGTTTGGGCAGCTTGGTCATGGTGATACCTTGTCATTA 420
||||||||||||| |||||||| ||||| ||||||||||||||||||| | ||||||||
Sbjct 381 CTTTTCACATGTGGTAATGGCTCATTTGGTCAGCTTGGTCATGGTGATAACATGTCATTA 440
Query 421 AGCACTCCAGCTAAAGTCTCTCACTTTAACAATGACAGTGTGAAGATGGTAGCTTGTGGT 480
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 441 AGCACTCCAGCTAAAGTCTCTTACTTTAACAATGAGAGTGTGAAGATGGTAGCTTGCGGT 500
Query 481 ATGCGCCACTCACTTGTTTTGTTTGCAGGGAATCAAGTGTGTGGATTTGGATCTGGAAAA 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 501 ATGCGCCACTCACTTGTCTTGTTTGCAGGGAATCAAGTGTGCGGATTTGGATCTGGAAAA 560
Query 541 CGTGGACAGTTAGGTTTCTCATCAGACAGAATAAAATCAGTAAATCTTCCTTGTGTTGTC 600
|||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||
Sbjct 561 CGTGGACAGTTAGGTTTCACATCAGACGGAACAAAATCAGTAAATCTTCCATGTGTTGTC 620
Query 601 TCTGGATTAAAAGATGTTGAGGTTGTTCGTATATCAGCTAATGGAGATCATAGTGCAGCT 660
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 621 TCTGGATTAAAAGATGTTGAGGTTACTCGTATACCAGCTAATGGAGATCATAGTGCAGCT 680
Query 661 ATATCCGCTGATGGACAGTTCTTCAGTTGGGGAAGAGGATTCTGCGGC-GGCCCTGATGT 719
||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 681 ATATCTGCTGATGGACAGTTCTTCAGTTGGGGAAGAGGATTCTGTG-CTGGCCCTGATGT 739
Query 720 TCATGCCCCTCAGAGCTTGCCTTCACCTCTATCTTTCAGAGAAGTTGCTGTAGGATGGAA 779
||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 740 TCAAACCCCTCAGTGTTTGCCTTCATCTCTATCTTTCAGAGAAGTTGCTGTAGGATGGAA 799
Query 780 TCATGCTTTACTACTGACCGTCGATGGTGAGGTGTTCAAGCTTGGTAGCACTCTTAATAA 839
||||||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||||
Sbjct 800 TCATGCTTTACTACTAACCGTCGATGGCGAGGTTTTCAAGCTTGGTAACACCCTTAATAA 859
Query 840 ACAACCTGAGAAGCAACAACTGCAAATAGATTCCTCTGAAGCTCTCTTTGAGAAAGTTCC 899
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 860 ACAACCTGAGAAGCAACAACTGCAAATAGATTCCTCTGAAGCTCTCTTGGCGAAAGTTTC 919
Query 900 GGATTTTGATGGAGTTAAAGTTATGCAGATAGCAGCAGGAGCAGAGCATTCTGCTGCCGT 959
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 920 AGATTTTGATGGAGTTAAAGTTCTGCAAATTGCAGCAGGAGCAGAGCATTCTGCTGCCGT 979
Query 960 AACAGAGAATGGAGAAGTTAAGACATGGGGATGGGGAGAACATGGTCAGCTAGGCCTTGG 1019
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 980 AACAGAGATTGGAGATGTTAAGACATGGGGATGGGGTGAACATGGTCAGCTAGGCCTTGG 1039
Query 1020 AAATACCAATGACCAAACCAGTCCTGAATTGGTGAGCTTAGGAAGTATAGACCTGCGAAC 1079
|||||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1040 AAATACCAATGATCAGACCAGTCCTCAACTGGTGAGCCTAGGAAGTATAGACCTGCGAAC 1099
Query 1080 GAAAGAGATCAAAGTATATTGCGGAAGTGGATTTACTTATGCAGTAAAACGAAAACAAGA 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1100 GAAAGAGATCAAAGTATATTGCGGAAGTGGATTTACTTATGCAGTAAGGCGAAAGCAAGG 1159
Query 1140 GCTTTC 1145
||||||
Sbjct 1160 GCTTTC 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5