BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27070.1
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921521 jgi|Araly1|921521|scaffold_102802.1 2571 0.0
> Ahg921521 jgi|Araly1|921521|scaffold_102802.1
Length=1647
Score = 2571 bits (1392), Expect = 0.0
Identities = 1568/1652 (95%), Gaps = 16/1652 (1%)
Strand=Plus/Plus
Query 207 TGTTCGTCGAAATGCTCCAACCATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGT 266
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTTCGACGAAATGCTTCAACCATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGT 60
Query 267 TTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCATC--T-TTCTTCTTTTGGTTC 323
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 61 TTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCCTCTTTCTTCTTCTTTTGGTTC 120
Query 324 AACTTTTAATCCCAATTATAAGGCCAAAGCTTGCATACGTTTTGCAAGAAAAGTTTGTGG 383
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 121 AACTTTTAATCCCAATTATAAAGCCAAAGCTTGTATACGTTTTGCAAGAAAAGGTTGTGG 180
Query 384 GTCTACTGTTCTAGGGTTTCTTGAGGTGAAGCCGAGGAAGAAAAGTTGTTGTTCTCGTTG 443
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 181 GTCTACTGTTCTAGGGTTTCTTGAGGTCAAGCCGAGGAAGAAAAGTTGTTGCTCTCGGTG 240
Query 444 TAATGGGGTTTCGAGGATGTGTAATAAGCGTAATTTGGGTTGGGATAGCGAGGGAAGTAA 503
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TAATGGGGTTTTGAGGATGTGTAATAAGCGTAGTTTGGGTTGGGATAGCGAGGGAAGTAA 300
Query 504 GGATCTTGAAACCGAGATTTTGGAGTTTATGAAGAATTCGGAGAAACCTGGGATGTTTCC 563
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GGATCTTGAATCGGAGATTTTGGAGTTTATGAAGAATTCGGAGAAGCCTGGGATGTTTCC 360
Query 564 GAGTAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCA 623
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGCAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCA 420
Query 624 AGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGAAGGTCCGAGTAAA 683
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 421 AGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGGAGGTCCAAGTAAA 480
Query 684 TGAGAACGTGACGCCACAGGATTTACATATCGAGAAACAGCTTCCTAATTGTAATTCTCC 743
|||||||| | ||||| ||| |||||||||||||||||||||| | | ||||||||||
Sbjct 481 CGAGAACGTCATGCCACGGGAATTACATATCGAGAAACAGCTTCGTGACTGTAATTCTCA 540
Query 744 AGAAATGGATAAAACTTTGAATCATGGAGATCTTGATCTTTCCTCAAATCTTTCATCTTC 803
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 541 AGAAATGGATAAAACTTTGAGTCATGGAGATCTTGATTTTTCCTCAAATCTTTCATCTTC 600
Query 804 GACAGAA-CAAGTGGAAT-CTAGA-AACGATAGTGGAATTGAAGGCATTTTGACCAGATT 860
|||||| | || | || | || || || ||||||||||||||||||||||| |||||
Sbjct 601 AACAGAAGC-GGTAG-ATGGT-GAGAATGAGAGTGGAATTGAAGGCATTTTGACTAGATT 657
Query 861 GGAGAAAGAAAGGAATTTGAGTCTAGGGATTAGCGTGAGGGAGAATGGGAAAAGCAATGG 920
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 658 GGAGAAAGAAAGGAATTTGGGTCTAGGGATTAGCTTGAGGGAGAATGGGAAAAGCAATGG 717
Query 921 TGCCATGCATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGC 980
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGCCGTGAATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGC 777
Query 981 TAGTGAAATTCAAGAAGTCGACGGCAGTAGAGGCTCAGGTGAATATGCACAAAGTAGGTA 1040
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 778 TAGTGAAATTCAAGAAGTCGACGGTAGTCGAGGCTCAGGTGAATATGCACAAACTAGGTA 837
Query 1041 TCAAGGAGCCAAGTCGGTTTCAGGAAAGCCAGGCTTAAGCGATTCACCTACGTCAGAAAC 1100
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 838 TCAAGGAGCCAAGTCGGTTTCAGGAACGCCAGGCTTAAGCGATTCACCTACATCAGAAAC 897
Query 1101 ATGGAGGACGTGGAGTATGAGAAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGA 1160
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATGGAGGACGTGGAGTATGAGGAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGA 957
Query 1161 AATTTCCTCCAGTGGTTTGACTGGTGTGAAGAA--A-GATGATACGAAGAAGGATTCTGG 1217
|||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 958 AATTTCTTCCAGTGGTTTGACTGGTGTGAAGAAGGATGATGATACGAAGAAGGATTCTGG 1017
Query 1218 TGATAGCATGAATGGGAA-AGATAGAATTGCATCTTCCTCAGAAGATGTAAATAAAACTC 1276
||||||||||||| |||| |||||||| | |||||||| ||||||||||||| |||||||
Sbjct 1018 TGATAGCATGAAT-GGAAGAGATAGAACTACATCTTCCCCAGAAGATGTAAACAAAACTC 1076
Query 1277 ATATCAAACA-CCGTCTTCAACAGCTCCAGTCAGAACTTTCTTCTGTTCTTCACTCCCTT 1335
|||||||| | ||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1077 ATATCAAA-AGCCGTCTTCAGCATCTCCAGTCAGAACTTTCTTCTGTTCTCCACTCCCTT 1135
Query 1336 AGATCTCCTCCTGATAAAGTTGTGACAAGTAAGGATAGTGAGACAACTGCTGGGAACTTG 1395
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1136 AGATCTCCTCCTGATACAGTTGTGACAAGTAAGGATAGTGAGATAACTTCTGGGAACTTG 1195
Query 1396 GAGAACCTCTCTGATGATTGGGAGTACAAAGAGAATGAGATCATACATGCCCAAAATAAG 1455
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1196 GAGAACCTCTCTGATGATTGGGAGTTCAAAGAGAATGAGATCATACATGCCCAGAATAAG 1255
Query 1456 TTGCGGTCTACACGAGCAAAGTTGGCTGTTCTTGAAGGAAAAATGGCTATGGCTATAATA 1515
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1256 TTGCGGTCTACACGAGCAAAGTTGGCAGTTCTTGAAGGAAAAATGGCGATGGCTATAATA 1315
Query 1516 GATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAGTAGAGCTTTA 1575
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1316 GATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAATAGAGCTTTA 1375
Query 1576 CGATTACTTCGAACTGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACG 1635
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CGATTACTTCGAACCGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACG 1435
Query 1636 GGTTCATTTGACGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCTGAGAACGGAGTCTTC 1695
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1436 GGTTCATTTGATGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCAGAGAACGGAGTCTTC 1495
Query 1696 TCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAG 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAG 1555
Query 1756 TGGAAAGTTGACCCGCTTCGACCCATTGTTACTAGTGGTGGATATGAAAACAATCTGCTA 1815
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 1556 TGGAAAGTTGACCCGCTTCGACCCATTGTTACTTGCGGTGGATATGAGAACAATCTGCTA 1615
Query 1816 ATCATCTCTTGAGGTCAAAGGCAACAATATTT 1847
||||||||||||||||||||||||| ||||||
Sbjct 1616 ATCATCTCTTGAGGTCAAAGGCAACGATATTT 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79532431560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5