BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27080.1 Length=1731 Score E Sequences producing significant alignments: (Bits) Value Ahg912316 jgi|Araly1|912316|Al_scaffold_0001_2570 1256 0.0 > Ahg912316 jgi|Araly1|912316|Al_scaffold_0001_2570 Length=1605 Score = 1256 bits (680), Expect = 0.0 Identities = 799/858 (93%), Gaps = 2/858 (0%) Strand=Plus/Plus Query 1 ATGGGAGTTGTTGAGAATCGGAAAATTTTGCCAGAGAAAAAACTTGGAGGCTGGAGAGCC 60 |||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 1 ATGGAAGTTGTTGAGAATCGGAAAATTTTGCCAGAGCAAAAACGTGGAGGCTGGAGAGCC 60 Query 61 ATTACGTTCATCCTAGGTAATGAGACGTTGGAGAAGTTAGGATCGATTGGAGTATCAGCA 120 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 ATTACGTTCATCCTAGGAAATGAGACGTTGGAGAAGTTAGGATCGATGGGAGTATCAGCT 120 Query 121 AATTTTATGTTGTATTTGAGGAATGTGTTTCACATGGAGCCAGTAGAAGCTTTTAACGTA 180 ||||||||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct 121 AATTTTATGGTGTATTTGAGGAATGTGTTTCACATGGAGCCAGTAGAAGCTTCCAATGTC 180 Query 181 TACTACTTGTGGATGGGTCTCACTAACTTTGCTCCACTCCTCGGCGCATTAATCTCCGAC 240 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 181 TACTACTTGTGGATGGGTCTCACTAACTTTGCTCCACTCCTCGGAGCATTGATCTCTGAC 240 Query 241 GCCTACATTGGCCGTTTCAAGACCATCGCTTACGCATCCCTCTTCTCAATTCTAGGACTA 300 || ||||||||||| ||||||||||||||||| |||||| ||||||| ||||| |||||| Sbjct 241 GCTTACATTGGCCGCTTCAAGACCATCGCTTATGCATCCTTCTTCTCCATTCTCGGACTA 300 Query 301 ATGACGGTGACACTCACCGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCT 360 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATGACGGTCACACTCACAGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCT 360 Query 361 CATCCAGACGAATGCGACGATCCGAACAAGCTCCAGCTCGGGATTCTATTCCTCGGTCTC 420 | |||||||||||||||||| || ||||| ||||||||||||||| | ||||||||||| Sbjct 361 CGTCCAGACGAATGCGACGACCCAAACAAACTCCAGCTCGGGATTTTGTTCCTCGGTCTT 420 Query 421 GGCTTTCTCTCCATCGGTAGCGGCGGAATCCGGCCTTGCAGCATTCCATTCGGAGTTGAT 480 |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| Sbjct 421 GGCTTTCTCTCCATCGGTAGCGGCGGGATCAGGCCTTGCAGCATCCCATTCGGAGTTGAC 480 Query 481 CAGTTTGACCAACGAACAGAGCAAGGCCTTAAAGGAGTGGCCAGTTTCTTTAATTGGTAC 540 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 481 CAGTTTGACCAACGAACAGAGCAAGGCCTTAAAGGAATGGCTAGTTTCTTTAATTGGTAC 540 Query 541 TACTTGACCTTAACTATGGTTCTCATCTTTTCGCATACCGTTGTGGTCTACTTACAGAC- 599 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 541 TACTTGACCTTAACCATGGTTCTCATCTTTTCGCATACCGTGGTGGTCTACTTACAAACA 600 Query 600 TGTCAGTTGGGTCATCGGGTTTAGCATCCCGACTAGTTTAATGGCTTGTGCAGTGGTTCT 659 | ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| Sbjct 601 T-TCAGTTGGGTCATCGGGTTCAGCATCCCGACCGGTTTAATGGCTTGTGCGGTGGTTCT 659 Query 660 GTTCTTTGTCGGTATGCGGTTTTACGTATATGTCAAACCGGAAGGTAGTGTATTCTCTGG 719 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 660 GTTCTTTGTCGGTATGCGGTTTTACGTGTATGTCAAACCCCAAGGTAGTGTATTCTCTGG 719 Query 720 TATTGCTCGGGTCATCGTGGCAGCTCGTAAGAAACGGGACCTCAAAATTTCGCTTGTGGA 779 ||||||||||||||||||||||||||||||||||||| ||||| | ||| | | ||||| Sbjct 720 TATTGCTCGGGTCATCGTGGCAGCTCGTAAGAAACGGAACCTCGAGATTCCACCAGTGGA 779 Query 780 CGATGGGACTGAGGAGTATTATGAGCCGCCGGTGAAACCTGGCGTGTTATCCAAGTTACC 839 |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 780 TGATGGGACGGTGGAGTATTATGAGCCGCCGGTGAAACATGGCGTGTTATCCAAGTTACC 839 Query 840 TCTTACTGACCAATTCAA 857 ||| |||||||||||||| Sbjct 840 TCTAACTGACCAATTCAA 857 Score = 1153 bits (624), Expect = 0.0 Identities = 710/752 (94%), Gaps = 4/752 (1%) Strand=Plus/Plus Query 971 TCAGAGTTGTTCCGGTTTGGTCTGCTGGAATAATTTCAATCGTTGCAATGACCACGCAAG 1030 ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 854 TCAAAGTCGTTCCGGTTTGGTCTGCTGGAATAATCTCAATCGTTGCAATGACCACACAAG 913 Query 1031 CAACTTTCATGGTCTTTCAAGCTACAAAAATGGATCGACACATGGGTCCACACTTTGAGA 1090 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 914 CAACTTTCATAGTCTTTCAAGCTACGAAAATGGATCGACACATGGGTCCACACTTTGAGA 973 Query 1091 TCCCGGCCGCCTCCATAACCGTCATTTCTTACATCACTATAGGCATTTGGGTGCCTATCT 1150 ||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 974 TCCCGGCTGCTTCCATAGCAGTCATTTCTTACATCACTATAGGCATTTGGGTGCCTATCT 1033 Query 1151 ACGAACACCTCTTAGTCCCGTTCCTTTGGCGAATGAGAAAGTTCAGGGTCACTCTCCTTC 1210 |||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 1034 ACGAACGCCTCTTAGTCCCGTTCCTATGGCGAATCCGAAAGTTCAGGTTCACTCTCCTTC 1093 Query 1211 AACGGATGGGGATAGGGATCGTCTTCGCCATTCTCTCCATGTTCACTGCAGGGTTTGTAG 1270 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1094 AACGGATGGGGATAGGGATCGTCTTCGCCATTCTCTCCATGTTCACTGCAGGGATTGTAG 1153 Query 1271 AGGGAGTGAGGCGGACACGGGCTACTGAAATGACTCAAATGTCGGTGTTTTGGCTGGCTT 1330 |||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 1154 AGGGAGTGAGGCAGACACGGGCTACTGAAATTACTCAAATGTCAGTCTTTTGGCTGGCTT 1213 Query 1331 TGCCACTGATTCTGATGGGGCTCTGCGAGTCATTTAATTTCATTGGACTGATCGAGTTCT 1390 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1214 TGCCACTGATTCTGATGGGGCTCTGCGAGTCATTTAATTTCATTGGACAGATCGAGTTCT 1273 Query 1391 TCAACAGTCAGTTTCCAGAGCACATGAGAAGCATAGCGAATTCGCTATTTCCACTCTCAT 1450 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1274 TCAACAGTCAATTTCCAGAGCACATGAGAAGCATAGCGAATTCGCTATTTCCACTCTCAT 1333 Query 1451 TTGCTGCAGCTAATTATCTGAGCAGTCTGCTGGTGACCACCGTGCATAAAGTCTCAGGCA 1510 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1334 TTGCTGCCGCTAATTATCTGAGCAGTCTGCTGGTGACCACCGTGCATAAAGTTTCAGGCA 1393 Query 1511 CAAAAGACCACCCTGACTGGCTGAACAAGGACCTTGATAGAGGGAAGTTGGACTACTTCT 1570 |||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1394 CAAAAGACCAGCCGGACTGGCTGAACAAGGACCTTGATAGAGGGAAATTGGATTACTTCT 1453 Query 1571 ACTATCTGATTGCC-GTTTTGGGTGTGGTTAACCTTGTGTATTTCTGGTACTGTGCCC-A 1628 |||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||||| | Sbjct 1454 ACTATCTGATTGCCTGTTT-GGGTGTGGTTAATCTTATGTATTTCTGGTACTGTGCCCGA 1512 Query 1629 TAGATACCAGTATAAAGCCGGTTCGCAAATTGAAGATTTCAATGAGGAGAAGTCTCTTCT 1688 || |||||||||||||||||||| ||||||||||||||||| ||||||||| || |||| Sbjct 1513 -AGCTACCAGTATAAAGCCGGTTCACAAATTGAAGATTTCAAGGAGGAGAAGCCTTTTCT 1571 Query 1689 AGACATCGAACCAAACCAGAGACACGATCAAT 1720 |||||| ||||||||| ||||||| ||||||| Sbjct 1572 AGACATAGAACCAAACAAGAGACATGATCAAT 1603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64943867725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5