BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27080.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912316 jgi|Araly1|912316|Al_scaffold_0001_2570 1256 0.0
> Ahg912316 jgi|Araly1|912316|Al_scaffold_0001_2570
Length=1605
Score = 1256 bits (680), Expect = 0.0
Identities = 799/858 (93%), Gaps = 2/858 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGTTGTTGAGAATCGGAAAATTTTGCCAGAGAAAAAACTTGGAGGCTGGAGAGCC 60
|||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1 ATGGAAGTTGTTGAGAATCGGAAAATTTTGCCAGAGCAAAAACGTGGAGGCTGGAGAGCC 60
Query 61 ATTACGTTCATCCTAGGTAATGAGACGTTGGAGAAGTTAGGATCGATTGGAGTATCAGCA 120
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ATTACGTTCATCCTAGGAAATGAGACGTTGGAGAAGTTAGGATCGATGGGAGTATCAGCT 120
Query 121 AATTTTATGTTGTATTTGAGGAATGTGTTTCACATGGAGCCAGTAGAAGCTTTTAACGTA 180
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 121 AATTTTATGGTGTATTTGAGGAATGTGTTTCACATGGAGCCAGTAGAAGCTTCCAATGTC 180
Query 181 TACTACTTGTGGATGGGTCTCACTAACTTTGCTCCACTCCTCGGCGCATTAATCTCCGAC 240
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 181 TACTACTTGTGGATGGGTCTCACTAACTTTGCTCCACTCCTCGGAGCATTGATCTCTGAC 240
Query 241 GCCTACATTGGCCGTTTCAAGACCATCGCTTACGCATCCCTCTTCTCAATTCTAGGACTA 300
|| ||||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||||||
Sbjct 241 GCTTACATTGGCCGCTTCAAGACCATCGCTTATGCATCCTTCTTCTCCATTCTCGGACTA 300
Query 301 ATGACGGTGACACTCACCGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCT 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGACGGTCACACTCACAGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCT 360
Query 361 CATCCAGACGAATGCGACGATCCGAACAAGCTCCAGCTCGGGATTCTATTCCTCGGTCTC 420
| |||||||||||||||||| || ||||| ||||||||||||||| | |||||||||||
Sbjct 361 CGTCCAGACGAATGCGACGACCCAAACAAACTCCAGCTCGGGATTTTGTTCCTCGGTCTT 420
Query 421 GGCTTTCTCTCCATCGGTAGCGGCGGAATCCGGCCTTGCAGCATTCCATTCGGAGTTGAT 480
|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 421 GGCTTTCTCTCCATCGGTAGCGGCGGGATCAGGCCTTGCAGCATCCCATTCGGAGTTGAC 480
Query 481 CAGTTTGACCAACGAACAGAGCAAGGCCTTAAAGGAGTGGCCAGTTTCTTTAATTGGTAC 540
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 481 CAGTTTGACCAACGAACAGAGCAAGGCCTTAAAGGAATGGCTAGTTTCTTTAATTGGTAC 540
Query 541 TACTTGACCTTAACTATGGTTCTCATCTTTTCGCATACCGTTGTGGTCTACTTACAGAC- 599
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 541 TACTTGACCTTAACCATGGTTCTCATCTTTTCGCATACCGTGGTGGTCTACTTACAAACA 600
Query 600 TGTCAGTTGGGTCATCGGGTTTAGCATCCCGACTAGTTTAATGGCTTGTGCAGTGGTTCT 659
| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 601 T-TCAGTTGGGTCATCGGGTTCAGCATCCCGACCGGTTTAATGGCTTGTGCGGTGGTTCT 659
Query 660 GTTCTTTGTCGGTATGCGGTTTTACGTATATGTCAAACCGGAAGGTAGTGTATTCTCTGG 719
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 660 GTTCTTTGTCGGTATGCGGTTTTACGTGTATGTCAAACCCCAAGGTAGTGTATTCTCTGG 719
Query 720 TATTGCTCGGGTCATCGTGGCAGCTCGTAAGAAACGGGACCTCAAAATTTCGCTTGTGGA 779
||||||||||||||||||||||||||||||||||||| ||||| | ||| | | |||||
Sbjct 720 TATTGCTCGGGTCATCGTGGCAGCTCGTAAGAAACGGAACCTCGAGATTCCACCAGTGGA 779
Query 780 CGATGGGACTGAGGAGTATTATGAGCCGCCGGTGAAACCTGGCGTGTTATCCAAGTTACC 839
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 TGATGGGACGGTGGAGTATTATGAGCCGCCGGTGAAACATGGCGTGTTATCCAAGTTACC 839
Query 840 TCTTACTGACCAATTCAA 857
||| ||||||||||||||
Sbjct 840 TCTAACTGACCAATTCAA 857
Score = 1153 bits (624), Expect = 0.0
Identities = 710/752 (94%), Gaps = 4/752 (1%)
Strand=Plus/Plus
Query 971 TCAGAGTTGTTCCGGTTTGGTCTGCTGGAATAATTTCAATCGTTGCAATGACCACGCAAG 1030
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 854 TCAAAGTCGTTCCGGTTTGGTCTGCTGGAATAATCTCAATCGTTGCAATGACCACACAAG 913
Query 1031 CAACTTTCATGGTCTTTCAAGCTACAAAAATGGATCGACACATGGGTCCACACTTTGAGA 1090
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 914 CAACTTTCATAGTCTTTCAAGCTACGAAAATGGATCGACACATGGGTCCACACTTTGAGA 973
Query 1091 TCCCGGCCGCCTCCATAACCGTCATTTCTTACATCACTATAGGCATTTGGGTGCCTATCT 1150
||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TCCCGGCTGCTTCCATAGCAGTCATTTCTTACATCACTATAGGCATTTGGGTGCCTATCT 1033
Query 1151 ACGAACACCTCTTAGTCCCGTTCCTTTGGCGAATGAGAAAGTTCAGGGTCACTCTCCTTC 1210
|||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1034 ACGAACGCCTCTTAGTCCCGTTCCTATGGCGAATCCGAAAGTTCAGGTTCACTCTCCTTC 1093
Query 1211 AACGGATGGGGATAGGGATCGTCTTCGCCATTCTCTCCATGTTCACTGCAGGGTTTGTAG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1094 AACGGATGGGGATAGGGATCGTCTTCGCCATTCTCTCCATGTTCACTGCAGGGATTGTAG 1153
Query 1271 AGGGAGTGAGGCGGACACGGGCTACTGAAATGACTCAAATGTCGGTGTTTTGGCTGGCTT 1330
|||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1154 AGGGAGTGAGGCAGACACGGGCTACTGAAATTACTCAAATGTCAGTCTTTTGGCTGGCTT 1213
Query 1331 TGCCACTGATTCTGATGGGGCTCTGCGAGTCATTTAATTTCATTGGACTGATCGAGTTCT 1390
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1214 TGCCACTGATTCTGATGGGGCTCTGCGAGTCATTTAATTTCATTGGACAGATCGAGTTCT 1273
Query 1391 TCAACAGTCAGTTTCCAGAGCACATGAGAAGCATAGCGAATTCGCTATTTCCACTCTCAT 1450
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TCAACAGTCAATTTCCAGAGCACATGAGAAGCATAGCGAATTCGCTATTTCCACTCTCAT 1333
Query 1451 TTGCTGCAGCTAATTATCTGAGCAGTCTGCTGGTGACCACCGTGCATAAAGTCTCAGGCA 1510
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1334 TTGCTGCCGCTAATTATCTGAGCAGTCTGCTGGTGACCACCGTGCATAAAGTTTCAGGCA 1393
Query 1511 CAAAAGACCACCCTGACTGGCTGAACAAGGACCTTGATAGAGGGAAGTTGGACTACTTCT 1570
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1394 CAAAAGACCAGCCGGACTGGCTGAACAAGGACCTTGATAGAGGGAAATTGGATTACTTCT 1453
Query 1571 ACTATCTGATTGCC-GTTTTGGGTGTGGTTAACCTTGTGTATTTCTGGTACTGTGCCC-A 1628
|||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||||| |
Sbjct 1454 ACTATCTGATTGCCTGTTT-GGGTGTGGTTAATCTTATGTATTTCTGGTACTGTGCCCGA 1512
Query 1629 TAGATACCAGTATAAAGCCGGTTCGCAAATTGAAGATTTCAATGAGGAGAAGTCTCTTCT 1688
|| |||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||
Sbjct 1513 -AGCTACCAGTATAAAGCCGGTTCACAAATTGAAGATTTCAAGGAGGAGAAGCCTTTTCT 1571
Query 1689 AGACATCGAACCAAACCAGAGACACGATCAAT 1720
|||||| ||||||||| ||||||| |||||||
Sbjct 1572 AGACATAGAACCAAACAAGAGACATGATCAAT 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5