BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27090.1
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472693 jgi|Araly1|472693|fgenesh2_kg.1__2647__AT1G27090.1 2331 0.0
> Ahg472693 jgi|Araly1|472693|fgenesh2_kg.1__2647__AT1G27090.1
Length=1549
Score = 2331 bits (1262), Expect = 0.0
Identities = 1464/1560 (94%), Gaps = 20/1560 (1%)
Strand=Plus/Plus
Query 1 AAAAACCAGACGCTTCAAC-TTATCCCCATTTCTCTGAAAACCCTAACAAATCCTCCTCT 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACCAGACGCTTCAACTTTATCCCCATTTCTCTGAAAACCCTAACAAATCCTCCTCT 60
Query 60 TGTTCCGCCACTGCCGCCGCCGCTACTCAACGGTGGTGAAT-TTTCT-A-TACGGTCAGT 116
|| |||||||| ||||||||||||| |||||||||||| || | ||| | | | ||| |
Sbjct 61 TGCTCCGCCACCGCCGCCGCCGCTATTCAACGGTGGTG-ATATATCTCAGT-CATTCACT 118
Query 117 TCGATCCTCTTTTTATCGACAATCCTACACAAATCCATAATCATGGCCGCCACTGCTTCC 176
||||||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 119 TCGATCCTC-TTTCATCGATAATCCTACAAAAATCCACAATCATGGCCGCCACTGCTTCC 177
Query 177 TCCGAAGCTTCTGAAGGACCAGTGATGGGTCTCATCAACAAGCGTCTCCGTGCTCTCCGT 236
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCTGAATCTTCTGAAGGACCAGTGATGGGTCTCATCAACAAGCGTCTCCGTGCTCTCCGC 237
Query 237 AAGAAATACAACCGAATCACTCAAATGGAAGAATCGATTTCTCAAGGCAAAACCCTAAAC 296
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 238 AAGAAATACAACCGAATCACTCAAATGGAAGAATCAATTTCTCAGGGCAAAACCCTAAAC 297
Query 297 AAGGAGCAAGAAGAAGTCCTCCGCTCTAAACCTGCCGTCGTCATCCTAATCGACGAGCTT 356
|||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct 298 AAGGAGCAAGAAGAAGTCCTCCGCTCTAAACCAGCCGTCGTCATCCTTATTGAAGAGCTT 357
Query 357 GAAAAGATCCGTGCTCCTCTCTCCGCCGCTG-TGACAGAGGAAATCAGCCTCGCTACTCA 415
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 358 GAAAAGATCCGTGCTCCTCTCTCCGCCGCTGTTG-CAGAAGAAATCAGCCTCGCTACTCA 416
Query 416 GCTTAACCGTGCTTCATCCGATCAAACCACCGCATCTGAGCAAAAGGAAGTCACTGATAT 475
|| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 GCATAACCGTGCTCCCTCCGATCAAACCACCGCGTCTGAGCAAAAGGAAGTCACTGATAT 476
Query 476 CCCGCAGGAAGTTAGCGGCGGCGATGATGGCGCTAAGTTGGAGGATCTGGTGAATTTCCT 535
|| ||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 477 TCCTCAGGAAGTTAGCGGCGGTGATGGTGGCGCTAAGTTGGAGGATCTGGTGAATCTCCT 536
Query 536 CTACTTTGGTTCACTCTTCGACGTCAAGTCACAGAACGAGTTCACTTCGATAATGTTGAC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTACTTTGGTTCACTCTTCGACGTCAAGTCACAGAACGAGTTCACTTCGATAATGTTGAC 596
Query 596 CAGGACTCATGAGAGAAGTTGCTGCTTGTCTTACGATTACGTTACCGATGATGCCACTGA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAGGACTCATGAGAGAAGTTGCTGCTTGTCTTACGATTACGTTACCGATGATGCCACTGA 656
Query 656 TCTCCTCGGCGATCGGGATTTGGATTCTATTTCTCAGCTTTGGAGCCTGATGGTTTCTCG 715
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 657 TCTCCTTGGCGATCGGGATTTGGATTCTCTTTCTCAGCTTTGGAGCTTGATGGTTTCTCG 716
Query 716 TCCGGTGGATTCAAGCTTATCTCACAAGAACGCTTTGGAGCGTTGTGTTGAGCACGCTAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 TCCGGTGGATTCAAGCTTATCTCACAAGAACGCTTTGGAGCGTTGTGTTGAGCACGCAAA 776
Query 776 GCTATGGTTAGCTAATTCCGAGCAGCCAATCGAATCAAACTGCAATACTTCATATGCTGC 835
||| |||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||
Sbjct 777 GCTTTGGTTAGCTAATTCGGAGCAGCCAATTGAATCAAACTGCAACATTTCATATGCTGC 836
Query 836 ATTGAGAGAGAAGTTGAAGAAGATTATGGCGTCTGACTATTTCACCACTACTCCGGAAAT 895
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||
Sbjct 837 ATTGAGAGAGAAGTTGAAGAAGATTATGGGGTCTGACTATTTCACTACTACGCCGGAGAT 896
Query 896 GAAAGCTCCGGTTGATGTGGCGGCTGCAGCTGGTAACTATACTTCTTACCAGGTGCCTGT 955
||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 897 GAAAGCTCCTGTTGATGTGGCGGCTGCTGCTGGTAACTACACTTCTTACCAGGTACCTGT 956
Query 956 GGACGTGGAGGCTTCAGGGCATTACCAGCAAAAGGAAGAAGATGCATCAAATTCCAAAGA 1015
||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 957 GGATGTGGAGGCTTCAGGGAACTACCAGCAAAAGGAAGAAGATGCATCAAATTTCAAAGA 1016
Query 1016 AGTAGAATCAGTTGTTAATGATCAATCTCAACAAGATGAGC-ATCAAAAGGTTGAGTTAG 1074
|| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||
Sbjct 1017 AGAAGAATCAGTTGTTAATGATCAATCTCCACAAGATGAGCGA-CAAAAGGTTGAGTCAG 1075
Query 1075 TGACCGAAGGAGAGGTGGTCCATGGACAGCAAGAACAGGGCTATACTCAGGTGGGAGGAG 1134
|||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1076 TGACTGAAAGAGAGGTGATCCATGGACAACAAGAACAGGGCTATACTCAGGTGGGAG--- 1132
Query 1135 CAGAGAATGCTAAAAGAGACTATGTGCCACGTGGGTCTTACCAGAACCAAAGAGGTCGTC 1194
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1133 CAGAGAATGCTAAGAGAGACTATGTGCCACGTGGGTCTTACCAGAACCAGAGAGGTCGTC 1192
Query 1195 GAGGTGCTCGAAGAGGTGGTGGTGG---CTATCAGAATGGGCGAGGAGGACGAGGTGGTG 1251
|||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1193 GAGGTGCTCGGAGAGGTGGTGGTGGTGGCTACCAGAATGGGCGAGGAGGTCGAGGTGGTG 1252
Query 1252 GTGGTGGCTACCAGAATGGGCGGTACGAATCTTATGATCAATCTGGTGGAAACGGTTATC 1311
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct 1253 GTGGTGGCTACCAGAATGGGCGATACGAAACTTATGATCAATCTGGTGGAAACGGTTACC 1312
Query 1312 AAAGGAACTACTACAACAACAGAGGAAGGGGACgtggtggtggtggtggtggAGGAAATG 1371
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1313 AAAGGAACTACTACAACAACAGAGGAAGGGGACGTGGTGGTGGTGGTGG---AGGAAATG 1369
Query 1372 GCCATTCATACAACAACTACCAAGACCCCAATGTTGCTGTTGCGTCTTAGCTTTTGTGCC 1431
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1370 GCCATTCATACAACAACTACCAAGACCCCAATGTTACTGTTGCGTCTTAGCTTTTGTGCC 1429
Query 1432 TCTGTCTTTTGGGTGCGTCTCTTTCATTATCTTGCGTTTATGCTATAACGCATATAAGCC 1491
| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 1430 TGTGTCTTTTGGGTGCGTCTCTTTCGTTATCTTGCGTTTATTCTATAACTCATATAAGCC 1489
Query 1492 TAATCTCGTGTTTGAAACGTTTGACAATGGCTCGGTTATTGCTATGAACttttttttttt 1551
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1490 AAATCTTTTGTTTGAAACGTTTGACAATGGCTCGGTTTTTGCTATGAACTTTTGTTTTTT 1549
Score = 58.4 bits (31), Expect = 2e-07
Identities = 34/35 (97%), Gaps = 1/35 (3%)
Strand=Plus/Plus
Query 1239 GGACGAGGTGGTGGTGGTGGCTACCAGAATGGGCG 1273
||| |||||||||||||||||||||||||||||||
Sbjct 1202 GGA-GAGGTGGTGGTGGTGGCTACCAGAATGGGCG 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58506616320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5