BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27100.1
Length=2090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472692 jgi|Araly1|472692|fgenesh2_kg.1__2646__AT1G27100.1 2615 0.0
Ahg951876 jgi|Araly1|951876|scaffold_2200008.1 215 1e-54
> Ahg472692 jgi|Araly1|472692|fgenesh2_kg.1__2646__AT1G27100.1
Length=1918
Score = 2615 bits (1416), Expect = 0.0
Identities = 1651/1763 (94%), Gaps = 21/1763 (1%)
Strand=Plus/Plus
Query 1 ATAACCAAACACAAACATCATCTTTCTCCTTCATTTCACAAACTTAAAATTCTCTGTTTT 60
||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATAACCAAAAACAAACCTCATCTTTCTCCTTCATTTCACAAACTTATAATTCTCTGTTTT 60
Query 61 TG--T-TTCTTCTTCTTTCAAAATCTCAAGCAAAAGAAAAAATGGAGCTATTCACAAAAG 117
|| | |||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||
Sbjct 61 TGTTTCTTCTTCTTCTTTCAAAATCTCAAG--AAA-AAAAAATGGAGTTATTCACCAAAG 117
Query 118 GTAACAACGTTAAGTTACGTAGCCACCTAGATAAGTTTTTAGTCGCCGACGATGACCAAG 177
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 118 GTAACAACGTCAAGTTACGTAGCCATCTAGATAAGTTTTTAGTCGCCGACGATGACCAAG 177
Query 178 AAACCATCCGTCAAAGCCGTAAAGGAGATGCACGGCGTGCCGTTTGGACGGTGGAGCCCG 237
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 AAACCATCCGTCAAAGCCGTAAAGGAGATGCCCGGCGTGCCGTTTGGACGGTGGAGCCCG 237
Query 238 TCGTCGATAAACCTAATCTGATAAGGTTAAAGAGCAGCCACGGCACGTACTTAACGGCGA 297
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 238 TCGTTGATAAACCTAATCTGATAAGGTTAAGGAGCAGCCACGGGACGTACTTAACGGCGA 297
Query 298 GCAACAAACCGTTATTGTTAGGTATGACCGGTGAGAAAGTGACTCAAACGGCGTCGTTTA 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAATAAACCGTTATTGTTAGGTATGACCGGTGAGAAAGTGACTCAAACGGCGTCGTTTA 357
Query 358 ACAAGCTGATGGATTGGCAAACGCAGTGGGAACCGGAGCGAGATGGGTTTCAGGTGAAGC 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACAAGCTCATGGATTGGCAAACGCAGTGGGAACCGGAGCGAGATGGGTTTCAGGTGAAGC 417
Query 418 TAAAATCTTGGTGCGGTAAGTGGATGAGGGCTAACGGTGGAACGCCGCCGTGGAGAAACT 477
| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGAAGTCGTGGTGCGGGAAGTGGATGAGGGCTAACGGTGGAACGCCGCCGTGGAGAAACT 477
Query 478 CTGTTACTCACGATGAGCCTCATACGTCAAAGACAAAGAACTGGTTGATTTGGGATGTTA 537
| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 478 CCGTTACTCACGACGAGCCTCATACGTCGAAGACCAAGAACTGGTTGATTTGGGATGTTA 537
Query 538 TAACTATTGATGGTTCTGATCTTGAAAACATGTCTGATGGTGATGAAAGCTCTGTTTCTT 597
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 538 TAACTCTTGATGGTTCTGATTTTGAAAACATGTCTGATGGTGATGAGAGCTCTGTTTCTT 597
Query 598 CTCCGGTCGGGTCTGAATTCGGATCAGAACCCGGGTCACCTGTTTC-TGCCAG-GTCTAC 655
||||||| |||||||||||||| |||||||||||||| || | || || | | ||||||
Sbjct 598 CTCCGGTTGGGTCTGAATTCGGGTCAGAACCCGGGTCGCCCG-CTCATG-CGGTGTCTAC 655
Query 656 GAAGAGTAGTATTAGCCGGTTTGCTTCTCTTGGTTTATCTACGTCTCCGAGATGGTCCTC 715
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 656 GAAGAGTAGTATTAGCCGGTTCGCTTCTCTTGGTTTACCTATGTCTCCGAGATGGTCCTC 715
Query 716 AAAACCGAAGTCGACGGCGAGTAGCTTCAACCAAAAAGAAACACCAGTATCTGTCTCAGC 775
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 716 AAAACCGAAGTCGACGACGAGTAGCTTCAACCAAAAAGAAACAACAGTATCTGTATCAGC 775
Query 776 AATGGAATTTTTCCAGAAAGCAAAAGCTATTCGAATGCGTAACAGTCACAACAAGTATCT 835
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 776 AATGGAGTTTTTCCAGAGAGCTAAAGCTATTCGAATGCGTAACAGTCACAACAAGTATCT 835
Query 836 AACAGCAGACGACGATGAAGAAACCGTAACTCAAAACCGTAACGGATCTACCAAAAACGC 895
||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 836 AACAGCAGACGACGACGAAGAAACCATAACACAAAACCGAAACGGATCTACCAAAAACGC 895
Query 896 TCGATGGACCGTCGAACCGGTTCGTGATTCTTTCCATGTTATTCGTCTTAAAAGCTGTTA 955
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 896 TCGATGGATCGTCGAACCGGTTCGTGATTCGTTCCATGTGATTCGTCTTAAAAGCTGTTA 955
Query 956 CGGTAAGTACTTAACCGCTTCTAACGAGCGGTTCTTGCTCGGGGCTACGGGGAAGAAAGT 1015
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 956 CGGTAAATACTTAACCGCTTCTAACGAACGGTTCTTGCTCGGAGCTACGGGGAAGAAAGT 1015
Query 1016 GATTCAGTTGAAACTGAGTCGGGTTGATTCGTCTGTTGAGTGGGAACCGCTTAGAGAAGG 1075
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1016 GATTCAGTTGAAACTGAGTCGGCTTGATTCGTCTGTTGAATGGGAACCGCTTAGAGAAGG 1075
Query 1076 GTCTAAGATTAAGCTTAGGACTAGATCTGGTAACTATTTACGAGG-TAATGGTGGTCTTC 1134
|||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 1076 ATCTAAGATTAAGCTTAGGACTAGATCTGGTAACTTTTTACG-GGCTAATGGTGGTCTTC 1134
Query 1135 CTCCTTGGAGAAACTCGGTCACACACGACGTTCCTCATTTGTCTGCTACTCAGGATTCGA 1194
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CTCCGTGGAGAAACTCGGTCACACACGACGTTCCTCATTTGTCTGCTACTCAGGATTCGA 1194
Query 1195 TTTCTTGGGATGTTGATGTTGTTGAGATCTTGACTGATTCCGAATTCAAGACGGAGTCTG 1254
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 TTTCTTGGGATGTTGATGTTGTTGAGATCTTGACTGATTCTGAATTCAAGACGGAGTCTC 1254
Query 1255 CGAAAGCGCCGCCACCGAAGACGACGTCTCCACCGCCGCATCGGAGACCGACGAGTTCGC 1314
|||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 1255 CGAAAGCGCC---ACCGAAGACGACGTCGCCACCGCCGCATCGGAGACCGACCAATTCGC 1311
Query 1315 CGTTGTCGGCTGAGTCTCCAAGGACTTCGTCTTCTCTTTCAGACAGATCCGATTCAGATT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CGTTGTCGGCTGAGTCTCCAAGGACTTCGTCTTCTCTTTCAGACAGATCCGATTCAGATT 1371
Query 1375 CGGTTGAGTCTCCGCCTAAATCTGATGGACGAACCATATATTACCATGTCGCTGACGAGG 1434
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |
Sbjct 1372 CGGTTGAGTCTCCGCCTAAATCTGATGGGCGAACCATATATTACCATATCGCTGATGAAG 1431
Query 1435 AAGGACACGTGGAAGATGAAACAACCGTTGGATATGCTTTCACGTTTAAAGGAAATAGCG 1494
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1432 AAGGACACGTGGAGGATGAAACAACGGTTGGATATGCTTTCACGTTTAAAGGAAACAGCG 1491
Query 1495 TGGCGGAGCTGACTCAGACATTGCGAGAAGAAACGTGCATGGAAGACGCTGTGGTGTGTA 1554
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1492 TGGCGGAACTGACTCAGACATTGCGAGAAGAAACGTGCATGGAAGACGCTGTGGTTTGCA 1551
Query 1555 CTCGTAGTCCTTTAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCTCCTAACAACG 1614
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1552 CTCGTAGTCAGATAAACGGCAAGCTGTTCCCTCTTCGTTTGCAACTTCCTCCTAACAACG 1611
Query 1615 GAACATTGCATGTCATTTTACTACCCTCCAGCGCGAGCCTCTAGAATCGACCCGA-GACA 1673
|||||||||||||| || || |||| |||||||| |||||||||| || | | | |
Sbjct 1612 GAACATTGCATGTCGTTGTATTACCTTCCAGCGCTAGCCTCTAGACGCGTGACTATG-CG 1670
Query 1674 ATTAGAAATGAGT-G-ATTGTGTGATTGTTTGGTGAAGCATATGATATGAACCGTATAAG 1731
|| || |||| | | |||| || |||||||||||||||||||||||||||| ||||||
Sbjct 1671 AT-AGTGATGA-TCGGATTGGGTTCTTGTTTGGTGAAGCATATGATATGAACCTTATAAG 1728
Query 1732 AAGATAGTAAGAGTTGGTAGTTG 1754
|||||||||||||||||||||||
Sbjct 1729 AAGATAGTAAGAGTTGGTAGTTG 1751
Score = 95.3 bits (51), Expect = 2e-18
Identities = 62/67 (93%), Gaps = 2/67 (3%)
Strand=Plus/Plus
Query 1899 AAATAAGCGATTTCTTTGTAAACGAACATT-TGGATTTTGGGGGTTTATTTGTGTGAGCA 1957
|||||||| ||||||| |||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1816 AAATAAGCTATTTCTTGGTAAACGAAC-TTGTGGATCTTGGGGGTTTATTTGTGTGAGCA 1874
Query 1958 TGGATTC 1964
|||||||
Sbjct 1875 TGGATTC 1881
Score = 82.4 bits (44), Expect = 1e-14
Identities = 51/54 (94%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 1828 GTAAGAGTTTTGATAATAGGAAGGACTTATAAATTATTTTTTGGGGGAATATAA 1881
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||
Sbjct 1769 GTAAGAGTTTTGATAATAGGAAGGACTTATAAATTCTTTTTTTGGGGAA-ATAA 1821
> Ahg951876 jgi|Araly1|951876|scaffold_2200008.1
Length=895
Score = 215 bits (116), Expect = 1e-54
Identities = 212/259 (82%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 1386 CCGCCTAAATCTG-ATGGACGAACCATATATTACCATGTCGCTGACGAGGAAGGACACGT 1444
||||| ||||||| | ||| | || || || ||||| |||| ||||| |||||||||||
Sbjct 606 CCGCCAAAATCTGAAGGGA-GGACTATTTACTACCACATCGCGGACGAAGAAGGACACGT 664
Query 1445 GGAAGATGAAACAACCGTTGGATATGCTTTCACGTTTAAAGGAAATAGCGTGGCGGAGCT 1504
||| || ||| || |||||||||| ||||| || ||||| ||||| ||||||| || |
Sbjct 665 GGAGGAAGAATCAGCCGTTGGATACGCTTTGACTTTTAATGGAAACAGCGTGGAACAGTT 724
Query 1505 GACTCAGACATTGCGAGAAGAAACGT-GCATGGAAGACGCTGTGGTGTGTACTCGTAGTC 1563
||| ||| | |||| |||||| || | ||||||| || | |||||||||||| || | ||
Sbjct 725 GACGCAGGCGTTGCAAGAAGAGAC-TAGCATGGATGATGTTGTGGTGTGTACACGCAATC 783
Query 1564 CTTTAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCTCCTAACAACGGAACATTGC 1623
|||||||||||||||||||||||||||||||||||||||| || || | |||||| |||
Sbjct 784 CTTTAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCACCAAATAGTGGAACAATGC 843
Query 1624 ATGTCATTTTACTACCCTC 1642
||||| || || |||||||
Sbjct 844 ATGTCGTTCTAGTACCCTC 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78618265680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5