BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27110.1

Length=1762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921517 jgi|Araly1|921517|scaffold_102798.1                        348    9e-95


> Ahg921517 jgi|Araly1|921517|scaffold_102798.1
Length=1133

 Score =  348 bits (188),  Expect = 9e-95
 Identities = 294/341 (86%), Gaps = 23/341 (7%)
 Strand=Plus/Plus

Query  153  AAGAAAGCAGATTTG-TTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATT  211
            ||| ||||| ||||| ||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct  34   AAGGAAGCAAATTTGTTTA-CTGGGGTTATGAGGTCAACACCTCTTCATATGATTGCATT  92

Query  212  GCTTCCATTAACTCTTATTCTGACCAGGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATT  271
            |||||||||||||||||||||   ||    |      |  | ||||||  ||||||||||
Sbjct  93   GCTTCCATTAACTCTTATTCT---CA----C-----CA--G-AGAGAG--GAAGGTGATT  135

Query  272  CTAGAAGCGCCAAACTATGATAATGATTGTGTTTTGGCCAACATTTTGGCTGCTCATTAC  331
            ||||||||||||   |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct  136  CTAGAAGCGCCATTGTATGATAAAGATTGTGTTTTGGGCAACATTTTGGCTGCTCATTAC  195

Query  332  CTTAGCTCTTTTGACCCTGTTAGAGCCAGAT-CATATGCTCTAGCTGCAGAATCCCGTCT  390
            |||||||||||||||  || |||||||| || | ||||||| |||||||||||| | |||
Sbjct  196  CTTAGCTCTTTTGACTTTGCTAGAGCCA-ATTCCTATGCTCGAGCTGCAGAATCACATCT  254

Query  391  TGGGAAAGCCACACTGTATGAGAAGGCAGTTTTCGAGGCTGTTAGTTACTTACTCTCTGA  450
            |||||||||||| | ||||||||| ||||||||||||||||||| ||||||| |||||||
Sbjct  255  TGGGAAAGCCACGCCGTATGAGAAAGCAGTTTTCGAGGCTGTTAATTACTTAATCTCTGA  314

Query  451  GAATATGGACGAC-GATGTGGCTTTGGAGTTACACTCTAAG  490
             ||||||||| || |||||||||||||| ||||||||||||
Sbjct  315  AAATATGGAC-ACCGATGTGGCTTTGGATTTACACTCTAAG  354


 Score =  303 bits (164),  Expect = 2e-81
 Identities = 204/223 (91%), Gaps = 4/223 (2%)
 Strand=Plus/Plus

Query  740  TGTCATGTTCTTCAAACTGAATGTCGTTTTAAAGAAGCAGTAAAGTTCATGGAAGAACAC  799
            |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |  |
Sbjct  421  TGTCATGTTCTTCAAACTGAATTTCGTTTTAAAGAAGCAGTAGAGTTCATGGAAGGATGC  480

Query  800  TCAGATTCATGGGATTCTTGCTCATCCTTAAGGTTTTCGCATAATTGGTGGCACGTAGCT  859
            |||| |||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct  481  TCAGCTTCATGGGATTCCTGCTCTTCCTTAAGGTATTCGCATAATTGGTGGCATGTAGCT  540

Query  860  GTTTGTTACTTGGAAGGAGGGTCTCACATAAGTAAGGTAGAAGA-AGTATATGATCATCA  918
            ||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||
Sbjct  541  GTTTGTTACTTGGAAGGAGGGTCTCCCATAAGTAAGGTACAAGATA-TATATGATCATCA  599

Query  919  GATGTGGAAAGAG-CTGGAGAAAGACGATGCTGTTGCTAGAGA  960
            |||||| ||| || ||||||||||| |||| ||||||||||||
Sbjct  600  GATGTGTAAA-AGGCTGGAGAAAGATGATGTTGTTGCTAGAGA  641



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66124665320


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5