BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27130.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472690 jgi|Araly1|472690|fgenesh2_kg.1__2644__AT1G27130.1 1362 0.0
> Ahg472690 jgi|Araly1|472690|fgenesh2_kg.1__2644__AT1G27130.1
Length=996
Score = 1362 bits (737), Expect = 0.0
Identities = 885/953 (93%), Gaps = 23/953 (2%)
Strand=Plus/Plus
Query 95 ATCAGATCAAT-AAAAACCAGAAGAAGTCATGGCTCAGAACGATACAGTGAAGCTGATAG 153
||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 52 ATCAGATCAATAAAAAACCAGAAGAAAACATGGCTCAGAACGAGACAGTTAAGCTGATAG 111
Query 154 GTTCTTGGTCTAGCCCTTATTCCCTTAGGGCACGTGTGGCTCTACACTTGAAATCTGTCA 213
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 112 GTTCTTGGTCTAGCCCTTATTCCCTTAGGGCACGAGTGGCTCTACACTTGAAATCTGTCA 171
Query 214 AGTACGAGTACTTAGACGAACCTGATGTTCTTAAAGAAAAGAGTGAACTCCTTCTCAAAT 273
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 172 AGTATGAGTACTTAGACGAACCTGATGTTCTTAAGGAAAAGAGCGAACTCCTTCTCAAAT 231
Query 274 CTAACCCCATCCACAAGAAAGTCCCTGTCCTCCTCCATGGTGACCTCTCCATCTCTGAGT 333
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 232 CTAACCCCATCCACAAGAAAGTCCCTGTCCTCCTCCATGGTGATCTCTCGATCTGTGAGT 291
Query 334 CCCTCAACGTTGTTCAATACGTCGACGAGGCTTGGCCCTCCGTTCCTTCAATCCTTCCTT 393
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 CCCTCAACGTCGTTCAATACGTCGACGAGGCTTGGCCCTCCGTTCCTTTAATCCTTCCTT 351
Query 394 CTGATGCCTATGATCGCGCATCTGCTCGGTTTTGGGCTCAGTACATCGATGACAAGTGTT 453
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 352 CTGATGCCTATGATCGCGCATCTGCTCGGTTCTGGGCTCAGTACATCGATGACAAGTGTT 411
Query 454 TTGCGGCGGTGGATGCGGTGGTCGGAGCAAAAGACGACGAAGGGAAAATGGCGGCGGTGG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 TTGCGGCGGTGGATGCGGTGGTCGGAGCAAAAGACGACGAAGGGAAAATGGCGGCGGCGG 471
Query 514 GAAAGCTGATGGAGTGTTTGGCGATACTTGAAGAAACGTTTCAGAAGAGCAGCAAAGGAT 573
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 472 GAAAGCTGATGGAGTGTTTGGCGATACTAGAAGAAACGTTTCAGAAGAGCAGCAAAGGAT 531
Query 574 TAGGGTTCTTTGGAGGAGAGACCATCGGCTACCTTGACATTGCTTGTTCGGCTCTTTTAG 633
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 TAGGGTTCTTCGGAGGAGAGACCATCGGCTACCTTGACATTGCATGTTCGGCTCTTTTAG 591
Query 634 GTCCGATCTCTGTGATCGAGGCGTTTTCCGGCGTCAAGTTTCTCCGGCAAGAGACAACAC 693
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 592 GTCCGATCTCTGTGATCGAGGCGTTTTCCGGCGTCAAGTTTCTTCGGCAAGAGACAACAC 651
Query 694 CTGGGTTGATCAAATGGGCCGAGAGGTTTAGGGCCCATGAAGCTGTTAAGCCCTACATGC 753
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 652 CTGGGTTGATCCAATGGGCCGAGAGGTTTAGGGCCCATGAAGCTGTTAAGCCGTACATGC 711
Query 754 CAACCGTCGAAGAGGTCGTTGCATTCGCAAAGCAAAAGTTCAATGTTCAGTGATGCGTTT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 712 CAACCGTCGAAGAGGTCGTTGCATTCGCAAAGCAAAAGTTCAATGTTCAGTGATGTGTTT 771
Query 814 T-TTGCTTTT--AAAAGCAAAAGCAATGTTG-TTGAATACGAATAAAA-TGATGTTTGTT 868
|| || ||||||||||||| ||| | || || || || |||| |||||||||||
Sbjct 772 GCTT-CTAAAGCAAAAGCAAAAGCAGTGT-GATTTAA-ACCAAAAAAAATGATGTTTGTT 828
Query 869 GTCTTTGAGAAACTTTAAATTTGTCTGTGTTTTGTGCCAAAACTTCTGAT-TAATTG-GT 926
|||||||||||| |||||| |||| ||||||||||| |||||||| || | | || | |
Sbjct 829 GTCTTTGAGAAAATTTAAAGTTGTGTGTGTTTTGTGGCAAAACTTATG-TGTCAT-GCGA 886
Query 927 TT-TTGGTCTTTGTGCGTTACTAT--TAT---CAATTTTATTCTTATTATTTGCCATAGC 980
|| ||| ||||||||||||| ||| ||| |||||||| |||||||| ||| ||||
Sbjct 887 TTATTG-TCTTTGTGCGTTAATATGATATTATCAATTTTAATCTTATTAATTGTTATAG- 944
Query 981 TTATGATT-AAATTGATCATAGAAGAAACATAGAGGCTTTAGGTTCTTGTGCT 1032
|||||||| |||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 945 TTATGATTTAAATA-ATCATAGAAGAAACAGAGAGGCTTTAGGTCCTTGTGCT 996
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 AACACGACTCCTAATTCCACTTTCCTCCCTCACTC 35
|||||||||||||||||||||||||||| ||||||
Sbjct 1 AACACGACTCCTAATTCCACTTTCCTCCATCACTC 35
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5