BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27135.1
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472689 jgi|Araly1|472689|fgenesh2_kg.1__2643__AT1G27135.1 346 5e-95
> Ahg472689 jgi|Araly1|472689|fgenesh2_kg.1__2643__AT1G27135.1
Length=264
Score = 346 bits (187), Expect = 5e-95
Identities = 229/250 (92%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 18 AGCTCTGATTTGCATAGTTATAGCTTCCCTCTTCGCTATGCATGAGTGTGAGAGATTGGA 77
|||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 15 AGCTCTAATTTGCATAGTTATATTTTCCTTCTTCGCTATGCATGAGTGTGAGAGATTGGA 74
Query 78 GGCTACAGAGGAAGAGAAATCGAGCAAGATCTATGTCCCACCATGTTACGAAACCATTTG 137
||||| |||| ||||||| ||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 75 GGCTATAGAGAAAGAGAATTCGAGAAAGATCTATGTACCACCATGTTACAAAACCATTTG 134
Query 138 CTCGTTCTCACTTAAAAAGGATTGTTGGTGCTGCTTCGAACCTTTAGTTCACAAAAATCT 197
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 135 CTCGTTCACGCTTAAAAAGGATTGTTGGTGCTGCTTCGAACCTGTAGTTCACAAAGATCT 194
Query 198 TTGTTGGGGAGTACATGATTTTCCGAACGCCAAAGAGCTTTGCTTCAACGAATATTCAAA 257
||||||||||||| | || | ||||||||||||||||||||||||| | |||| ||||||
Sbjct 195 TTGTTGGGGAGTAAAAGACTATCCGAACGCCAAAGAGCTTTGCTTCGATGAATGTTCAAA 254
Query 258 GAAGATTTAA 267
||||||||||
Sbjct 255 GAAGATTTAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9317935684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5