BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27200.1
Length=2202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921504 jgi|Araly1|921504|scaffold_102785.1 2789 0.0
> Ahg921504 jgi|Araly1|921504|scaffold_102785.1
Length=1770
Score = 2789 bits (1510), Expect = 0.0
Identities = 1690/1776 (95%), Gaps = 15/1776 (1%)
Strand=Plus/Plus
Query 193 GTTTCAATTTTTCTT---GAAGATGACGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 249
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GTTTCAATTTTTCTTGAAGAAGATGATGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 60
Query 250 AAACAAACAACAAGTAAAAGTACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTTTTG 309
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 61 AAACAAACAACAAGTAAAAGGACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTGCTG 120
Query 310 TTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAATCTCCACACTCTCTGTTCG 369
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAATCTCTACACTCTCTGTTCG 180
Query 370 TTCCGATTCTCTGAGACCGTCTCTTCGTGTTCCTACTCTCTCCGTTTTATCATCATCCAT 429
||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 181 TTCTGATTCTCTGAGACCGTCTCTTCGTGTTCCTGCTCTCTCTGTTTTATCATCATCCAT 240
Query 430 GGATTCGTTTCACCGTGGTAGATTCCCTCCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 489
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 241 GGATTCGTTTCACGGTGGTAGATTCCTTGCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 300
Query 490 TGACCATTTATTGCTGATTCTTTCGCACGGAATTGGGAAAGGTGaaaaaaaCCTAGTTTG 549
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 301 CGACCATTTATTGCTGATTCTTTCGCACGGAATTAGGAGAGGTGAAAAAAACCTAGTTTG 360
Query 550 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 420
Query 610 CGATGAGTTTAGGTCGATTGTTCGATGTCCTAATGCTCCTTTGAACTATTCTTCATCTGT 669
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 CGATGAGTTTAGATCGATTGTTCGATGCCCTAATGCTCCTTTGAACTATTCTTCATCTGT 480
Query 670 TGATTTGCAATTCCGTGGAGATTTGGTGAAGAAGAAGATGAA-GA-AA-CAGA---GCCG 723
||| |||||||| |||||||||||||||||||||| || ||| || || |||| ||||
Sbjct 481 TGAGTTGCAATTTCGTGGAGATTTGGTGAAGAAGATGAAGAAGGAGAAGCAGAGCCGCCG 540
Query 724 TCGTGTTCATAATTGGGAAAAGGTTGGTTATGAGGCGGTGATTGACGGCGACACGGTGGT 783
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 541 TCGTGTTCATAATTGGGAAAAAGTTGGTTACGAGGCGGTGATTGACGGCGACACGGTGGT 600
Query 784 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 660
Query 844 GTGTCAATTTGAGATTGAGAATTCGGAGGAGAAAGAGGTGACTCAAGCTATTGCTGCTGC 903
|||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 661 ATGTCAATTTGAGATTGGGGATTTGGAGGAGAAAGAGGTGACTCAAGCTGTTGCTGCAGC 720
Query 904 GCAAGAAGTTGTGAGGTGTGGTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 963
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAAGAAGTTGTGAGGTGTGTTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 780
Query 964 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACCCCTGCTCTGCCTTCGGT 1023
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 781 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACGCCTGCTCTGCCTTCCGT 840
Query 1024 TGCGAGAATCTACGGTTCTGATTCGATTGAGAAGAAGGAGAAGAAGAGTGGAGTTAAGCA 1083
|||||||||||||||||||||||||||| || | ||||||||||||| ||||||||
Sbjct 841 TGCGAGAATCTACGGTTCTGATTCGATT---CAG-A--AGAAGAAGAGTGGGGTTAAGCA 894
Query 1084 TGAGCTTTGTGTTTGTACAATGTTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 1143
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 895 TGAGCTTTGTGTTTGTACAATGCTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 954
Query 1144 GTATCACTCGTGGCTCGGTGTCGAACGTTGGTTTATATATGATAACAACAGCGATGATGG 1203
|||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 955 GTATCATTCGTGGCTTGGTGTTGAACGTTGGTTTATATATGATAACAATAGCGATGATGC 1014
Query 1204 TATACAAGAGGAGATTGAGTTGCTTAGTTCGGAGAATTACAATGTGAGTCGACATGTTTG 1263
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1015 TATACAAGAGGAGATTGAGTTGCTTAGTTTGGAGAATTACAATGTGAGTCGACATGTTTG 1074
Query 1264 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCGAAAGAAGA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCAAAAGAAGA 1134
Query 1324 ATGCAATTGGGTTGGATTCTTCGATGTCGACGAGTTCTACTACTTCCCTACGCATCGCTC 1383
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1135 ATGTAATTGGGTTGGATTCTTTGATGTTGACGAGTTCTACTACTTCCCTACGCATCGCTC 1194
Query 1384 TCAAGGCTTACCGAGCAAAAACGCTTTGAAGTCGCTTGTATCGAACTACACTTCTTGGGA 1443
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1195 TCAAGGCTTACCGAGCAAAGACGCTTTGAAATCGCTTGTATCGAACTACACTTCTTGGGA 1254
Query 1444 TTTGGTTGGAGAGATCAGAACGGACTGTCATAGCTACGGTCCATCCGGTCTGACCTCGGT 1503
|||||||||||||||| ||||||| |||||||| || ||||| |||||||| ||||||||
Sbjct 1255 TTTGGTTGGAGAGATCCGAACGGATTGTCATAGTTATGGTCCGTCCGGTCTAACCTCGGT 1314
Query 1504 TCCATCACAAGGCGTGACCGTAGGTTACACTTGTAGACAAGCGAACCCCGAGAGACACAA 1563
|||||| ||||||||||| || || ||||||||||||||||||||||| |||||||| ||
Sbjct 1315 TCCATCTCAAGGCGTGACGGTTGGGTACACTTGTAGACAAGCGAACCCTGAGAGACATAA 1374
Query 1564 GTCGATAATCCGCCCTGAGTTGCTCACAAGCTCATTGCTCAATGAAGTACATCATTTTCA 1623
||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1375 GTCGATAGTCCGACCTGAATTGCTCACAAGCTCATTGCTCAACGAAGTTCATCATTTTCA 1434
Query 1624 GTTGAAAGAAGGAGTGGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1683
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GTTGAAAGAAGGAGTCGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1494
Query 1684 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1554
Query 1744 TGTTGACTGGCAAGAGAATCAGAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1803
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGTGGACTGGCAAGAGAATCAAAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1614
Query 1804 AGAGGCAATCGAGCCGCCGGATTGGAAACGACGGTTCTGTGAAGTGTGGGACACTGGATT 1863
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1615 AGAGGCAATCGAGCCGCCGGATTGGAAACGTCGGTTCTGTGAAGTGTGGGATACTGGATT 1674
Query 1864 GAAGGATTTGGTTATGTCGAATTTTGCTGATCAAGTGACTGGTTATCTGCCGTGGCAGAG 1923
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1675 GAAGGATTTGGTTTTGTCGAATTTTGCTGATCAAGTGACTGGTTATTTGCCGTGGCAGAG 1734
Query 1924 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1959
||||||||||||||||||||||||||||||||||||
Sbjct 1735 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82884373120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5