BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27210.1
Length=2288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921503 jgi|Araly1|921503|scaffold_102784.1 3081 0.0
> Ahg921503 jgi|Araly1|921503|scaffold_102784.1
Length=1927
Score = 3081 bits (1668), Expect = 0.0
Identities = 1844/1928 (96%), Gaps = 16/1928 (1%)
Strand=Plus/Plus
Query 92 ctcaaatcggaaaaaaaaaTGTCGGTTCACGGACGATTTCCGGCGAGTCCACCGATTTCA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CTCAAATCGGAAAAAAAAATGTCGGTTCACGGACGATTTCCGGCGAGTCCACCGATTTCA 62
Query 152 TTATCTCCGTCGTCTTCTTCCACATCTCCGTCTTCACAGTCACCGTCAACACCACCTGAT 211
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 63 TTATCTCCGTCGTCTTCTTCCACATCTCCGTCGTCGCAGTCACCGTCAACACCACCTGAT 122
Query 212 CTAAAGCAACGAGTCATCGCTTGTCTCAACAAGCTCGCTGATCGTGACACTTTAGCTCTC 271
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 123 CTAAAGCAACGAGTCATCGCTTGTCTCAACAAACTCGCTGATCGTGACACTTTAGCTCTC 182
Query 272 GCTTCCGCTGAGCTTGACTCAATCGCTAGAAACCTTACTCACGATTCCTTCTCTCCGTTT 331
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 183 GCTTCCGCTGAGCTTGACTCCATCGCTAGAAACCTAACTCACGATTCCTTCTCTTCGTTT 242
Query 332 CTTAACTGTATCCACAACACTGACTCTTCCGTTAAATCTCCGGTGAGGAAACAGTGCGTT 391
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTTAACTGTATCCATAACACTGACTCTTCCGTTAAATCTCCGGTGAGGAAACAGTGCGTT 302
Query 392 GCTCTTTTATCGGTTCTTTCTCGTTACCACGGAGATTCTCTAACACCTCACCTTGCTAAG 451
||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 303 GCTCTCTTATCGGTTCTTTCTCGTTACCACGGCGATTCTCTCACGCCTCACCTTGCTAAG 362
Query 452 ATGGTTTCAACTGTTATTCGCCGTCTCCGAGATCCGGATTCCTCCGTTCGCTCTGCTTGC 511
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 363 ATGGTTTCAACTGTAATCCGCCGTCTCCGAGATCCGGATTCCTCAGTTCGCTCTGCTTGC 422
Query 512 GCCGTCGCGACGGCTGATATGTCGGCTCATGTTACGAGGCAGCCTTTTGCTTCCGTCGCG 571
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 GCCGTCGCGACGGCGGATATGTCGGCTCATGTTACGAGGCAGCCGTTTGCTTCCGTCGCG 482
Query 572 AAGCCGTTGATTGAGACTTTGATTCAGGAAGGTGATTCGAATCTGCAGATCGGAGCGGCG 631
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AAGCCGTTGATTGAGACGTTGATTCAGGAAGGTGATTCGAATCTGCAGATCGGAGCGGCG 542
Query 632 TTGTGTTTAGCGGCGTCTGTTGATGCGGCGACGGATCCGGAATCGGAGCAATTGAGAAAA 691
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 543 TTGTGTTTAGCGGCGTCTGTTGAAGCGGCGACGGATCCGGAATCAGAGCAATTGAGGAAA 602
Query 692 TCGTTGCCTAAGATTGGGAAATTGCTTAAGAGTGATGGTTTTAAGGCTAAAGCTGCGTTG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TCGTTGCCTAAGATTGGGAAATTGCTTAAGAGTGATGGTTTTAAGGCTAAAGCTGCGTTG 662
Query 752 TTGAGTGCCGTCGGGAGTATAATTACCGCCGGTGGTGCGGGAACTAAACCGGTTTTGGAT 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TTGAGTGCCGTCGGGAGTATAATTACCGCCGGTGGTGCGGGAACTAAACCGGTTTTGGAT 722
Query 812 TGGTTAGTTCCGGTTTTGATTGAGTTTTTGAGCAGTGAGGATTGGGCGGCGAGGAAGTCT 871
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 723 TGGTTAGTTCCGGTTTTGATTGAGTTTTTGAGTAGTGAGGATTGGGCGGCGAGGAAGTCT 782
Query 872 GCGGCTGAGGCGTTGGGTAAAGTTGCGACGGCGGAAGATTTGGCGTCGCAGTATAAGAAG 931
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 783 GCGGCGGAGGCGTTGGGTAAAGTTGCGTCGGCGGAAGATTTGGCGTCACAGTATAAGAAG 842
Query 932 ACTTGCACGACGGCTCTTGAGAGTAGAAGATTTGATAAGGTGAAAAGTGTTAGAGAAACT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ACTTGCACGACGGCTCTTGAGAGTAGAAGATTTGATAAGGTGAAAAGTGTTAGAGAAACT 902
Query 992 ATGAATAGAGCATTGAATCTGTGGAAGGAAGTTTCAACTGATGATGAAGCTTCTTTATCT 1051
|||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 903 ATGAATCGAGCATTGAATCTATGGAAGGAAGTTTCAAATGATGAAGAAGCTTCTTTATCT 962
Query 1052 CCATCAAGATCTTCAACAGATGATGGTAACATTGGATGCTTTTCCTCTGTCACGAGAAGT 1111
|||||||||||||||||||||||||||| |||||||||||| || || ||||||||||||
Sbjct 963 CCATCAAGATCTTCAACAGATGATGGTAGCATTGGATGCTTCTCTTCAGTCACGAGAAGT 1022
Query 1112 TCCACCATTGACGTTGGTTTAAAATCCGCTAGGCCAAAGAAAGTAACGCCTATAATGAAG 1171
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1023 TCCACCATTGACGTTGGTTTAAAATCCGCTAGACCAAAGAAAGTAACGCCTATAATGAAG 1082
Query 1172 AGGTCCCCATCTTTGCCTGTGAATAGATCATATGCAGCAACTAGACAAAAAGAAAATCTT 1231
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1083 AGGTCCCCATCTTTGCCTGTGAATAGGTCATATGCAGCAACTAGACAAAAAGAAAATCTT 1142
Query 1232 CCAAAAAGAAATCAAGGGAATATGACCATGTTAGTAGAAGAAGCCTCTAGTGTGGATAAC 1291
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1143 CCAAAAAGAAATCAAGGGAATATGACCATGTTAGCAGAAG---CCTCTAGTGTGGATAAC 1199
Query 1292 AAGGGACCACATTTTACACCGGTAAAGAAATCTTCGGAAGAAACAGAAGAGAAGGCTAAC 1351
||||||||||| | ||| ||| |||||||||||||||||||| | |||||||||| ||||
Sbjct 1200 AAGGGACCACAATGTACGCCGCTAAAGAAATCTTCGGAAGAATCGGAAGAGAAGGATAAC 1259
Query 1352 TCAGGGGGACCAGATATAATCAAACATACTATCTCTGAGAAAAGCAGGGAAGATAGTAAA 1411
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1260 TCAGGGGGACCAGATATAATCAAACATACTATCTCTGAGAAAAGCCGGGAAGAGAGTAAA 1319
Query 1412 GTATCGAGCTTTGGTGGTTTGAGGTCTGGCTCAAGGGTTGCACCTTGTAGTGACGATGGT 1471
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1320 GTATCGAGCTTTGGTGGTTTGAGGTCTGGCTCAAGGGTTGCACCTTGTAATGATGATGGT 1379
Query 1472 GATTCT-GT-A------A---A-GAATTGTAAAGATGATGTTGAAGAGAGCAAGAAAGAT 1519
|||||| || | | | ||| |||||||||||||||||||||||||||||||||
Sbjct 1380 GATTCTTGTGATTCTGTAGTCAAGAACTGTAAAGATGATGTTGAAGAGAGCAAGAAAGAT 1439
Query 1520 AGTGAGGAACTGTCTTTGATACGGGAACAGCTTGCTCTGATTGAGAACCAACAGTCTAGT 1579
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 AGTGAGGAACTGTCTTTAATACGGGAACAGCTTGCTCTGATTGAGAACCAACAGTCCAGT 1499
Query 1580 CTCTTAGACTTACTACAGAAATTCATGGGAACCTCACAGAGTGGAATTCAGTCTCTGGAG 1639
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1500 CTCTTAGACTTACTACAGAAATTCATGGGAACCTCACAGAGTGGCATCCAGTCTCTGGAG 1559
Query 1640 TCTCGTGTAAGCGGTCTAGAGATGGCGTTGGATGAAATATCGTGCGATCTGGCGGTTTCA 1699
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1560 TCTCGTGTAAGCGGTCTAGAGATGGCGTTGGATGAAATATCAAGCGATCTGGCGGTTTCA 1619
Query 1700 AACGGGAGAGTTCCTAGGAATAGTAGTGGCTGCGCAGGAGACAGTTGTTCCAAACTACCT 1759
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1620 AACGGGAGAGTTCCTAGGAATAGTAGTAGCTGTGCAGGAGACAGTTGTTCCAAACTACCT 1679
Query 1760 GGTACAGAGTTCTTAAGTCCCAAGTTCTGGAGAAAAACCGAGGAGAGACCACGGAACAGA 1819
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1680 GGTACAGAGTTCTTAAGTCCCAAGTTCTGGAGGAAAACCGAGGAGAGACCACGGATTAGA 1739
Query 1820 AACACAGCTAATGAAATGGCTGCGTACGACCAGGGGATGCGAGAATCAACAGATACGAAC 1879
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1740 AACACAGCTAGTGAAATGGCTGCGTACGACCAGGGAATGCGAGAATCAACAGATGCAAAC 1799
Query 1880 AACGGTCAAAGAGGAGGTTCAGTTTTTCAAAAGAGATCACGAAGAGACCAGTTCCAAGAC 1939
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1800 AATGGTCAAAGAGGAGGTTCAGTTTTTCAAAAGAGATCACCAAGAGACCAGTTCCAAGAC 1859
Query 1940 TGTATGCATACAACACTACAGAAACCAACCACCAGATTATCTACTTGAAGCAAAAGTG-A 1998
| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
Sbjct 1860 TCTATGCATACAACACTACAGAAACCAACAACCAGATTATCTACTTGAAGCGAAAGAGGA 1919
Query 1999 AAAGAGTG 2006
||||||||
Sbjct 1920 AAAGAGTG 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86160134190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5