BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27220.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912299 jgi|Araly1|912299|Al_scaffold_0001_2553 351 2e-96
> Ahg912299 jgi|Araly1|912299|Al_scaffold_0001_2553
Length=273
Score = 351 bits (190), Expect = 2e-96
Identities = 242/267 (91%), Gaps = 4/267 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGAGAAGGAAGTAAACCGAAGGCAA-CAGTAGATGATGCATATGCATACATTAG 59
||||| |||||||| |||||||||||||||| || ||||||| |||||||||||| ||||
Sbjct 1 ATGGCTGGAGAAGGTAGTAAACCGAAGGCAACCA-TAGATGACGCATATGCATACCTTAG 59
Query 60 GACTGTTAAGAGTACCTTTCATAATGATCCTGATAAATATGACGACTTTATGGCGATCAT 119
||||||||||||||| ||||||||||||| |||||||||||| |||||||| | ||||||
Sbjct 60 GACTGTTAAGAGTACATTTCATAATGATCGTGATAAATATGAAGACTTTATCGTGATCAT 119
Query 120 GAAAAATTTTAAAGCTCGCAAAATTGA-TAGAAATACTTGCATAGAAGAGGTAAAAGAAC 178
||| |||||||||||||| || || | || ||| ||||||||||||||||||| || |
Sbjct 120 GAACAATTTTAAAGCTCG-GAACTTTACAAGGAATGCTTGCATAGAAGAGGTAAAGGATC 178
Query 179 TGCTTAAAGGACATCGAGACTTGATATCGGGTTTCAATGCATTTTTGCCAAAGTGTTTGG 238
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 179 TGCTTAAAGGACATCGAGACTTGATCTCTGGTTTCAATGCATTTTTGCCAAAGTGTTTGG 238
Query 239 AGATCGCTGATTGGTACAACATAGAGG 265
|||||||||||||||||||| ||||||
Sbjct 239 AGATCGCTGATTGGTACAACTTAGAGG 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5