BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27240.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472682 jgi|Araly1|472682|fgenesh2_kg.1__2636__AT1G27240.1 715 0.0
Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 110 2e-23
Ahg921492 jgi|Araly1|921492|scaffold_102773.1 106 2e-22
> Ahg472682 jgi|Araly1|472682|fgenesh2_kg.1__2636__AT1G27240.1
Length=585
Score = 715 bits (387), Expect = 0.0
Identities = 524/586 (89%), Gaps = 26/586 (4%)
Strand=Plus/Plus
Query 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAACTCTTAGTGATGCGCATTCATATATCACT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAAGTCTTAGTGATGCGCATTCATATATCACT 60
Query 61 GCTGTGAAGGAAGCATTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTGAAGGAAGCCTTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120
Query 121 AATGATATTCGTGATCATGGTGTCGATAAGGCTAGTGGCATTGCAAAGT-TGACTGAACT 179
| |||||||||||||||| ||| ||||| |||| |||| || |||| | ||||||||||
Sbjct 121 ATTGATATTCGTGATCATACTGTTGATAAAGCTACTGGCCTTTCAAA-TATGACTGAACT 179
Query 180 CATTAAAGGACACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTT-C-CA----CAG-G 232
||||||||| |||||||||||||||||||||||||||||||||||| | || || |
Sbjct 180 CATTAAAGGGCACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTTCCACAGGTTAAGAG 239
Query 233 -------T-T---AA--C--A-GAGA-CATCCATCATGAGGCTAAGAGAACCATCATTCT 275
| | || | | | | |||||||||||||||||| ||||||||||||||
Sbjct 240 ATCCATCTCTCCCAAGGCTAACAATACCATCCATCATGAGGCTAATAGAACCATCATTCT 299
Query 276 CAAGGATAAGGCAACCATCCCTCCCGAGGCTGCTTATCGGGGTGCTAAGTCTACTTATAC 335
||||| | ||||||||| |||||||||||||| |||| ||||||||||||| |||||
Sbjct 300 CAAGGCTGAGGCAACCAACCCTCCCGAGGCTGAGCATCGTGGTGCTAAGTCTAAATATAC 359
Query 336 CAAAATAAAACAAATTGAGCCTGACTGGGAGAATTTTATGAACATGCTTAAGACAAGGTT 395
|| || ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 360 CATAAGAAAACGTATTGAGCATGATTGGGAAAATTTTATGAACATGCTTAAGACAAGGTT 419
Query 396 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGTATGATGA 455
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 420 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGCATAACGA 479
Query 456 AGGaaaaaaaTCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGAAAAAAATCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 539
Query 516 AGATTTGATCGACAAGTTTTTCAGATTGTTTAACATGAGAAAATAA 561
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 AGATTTGATCGACAAGTTTTTCAGATACTTTAACATGAGAAAATAA 585
> Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227
Length=711
Score = 110 bits (59), Expect = 2e-23
Identities = 149/192 (78%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 39 TGATGCGCA-TTCATATATCACTGCTGTGAAGGAAGCATTTCATGATGAACCTACAAAAT 97
||||||| | ||||||| ||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 321 TGATGCG-ACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAAT 379
Query 98 ATGAAGAGTTTATTAAACTCATGAATGATATTCGTGATCATGGTGTCGATAAGGCTAGTG 157
|||| || ||||||| ||| |||||||| || | || | ||||| |||||||
Sbjct 380 ATGAGGAAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTG 439
Query 158 GCATTGCAAAGTTG-ACTGAACTCATTAAAGGA-CACCCGAGGCTGCTTCGTGGTTTAAG 215
|||||| | | || | |||||||| |||| | ||| || ||||||| |||||| |
Sbjct 440 TCATTGCTAGGGTGGAG-GAACTCATGAAAG-ATCACTTGAATCTGCTTCTTGGTTTCTG 497
Query 216 TTTCTTC-TTTC 226
| ||||| ||||
Sbjct 498 TGTCTTCCTTTC 509
> Ahg921492 jgi|Araly1|921492|scaffold_102773.1
Length=579
Score = 106 bits (57), Expect = 2e-22
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 488 AGGTCGTTGATCTTCTCTATTATCATGAAGATTTGATCGACAAGTTTTTCAGATTGTTTA 547
||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 485 AGGTCATTGATCTTCTCTATTATCATGAAGATTTGATTGACAAGTTCTTCAGATACTTTA 544
Query 548 ACATGAGAAAAT 559
||||||||||||
Sbjct 545 ACATGAGAAAAT 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5