BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27240.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value Ahg472682 jgi|Araly1|472682|fgenesh2_kg.1__2636__AT1G27240.1 715 0.0 Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 110 2e-23 Ahg921492 jgi|Araly1|921492|scaffold_102773.1 106 2e-22 > Ahg472682 jgi|Araly1|472682|fgenesh2_kg.1__2636__AT1G27240.1 Length=585 Score = 715 bits (387), Expect = 0.0 Identities = 524/586 (89%), Gaps = 26/586 (4%) Strand=Plus/Plus Query 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAACTCTTAGTGATGCGCATTCATATATCACT 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAAGTCTTAGTGATGCGCATTCATATATCACT 60 Query 61 GCTGTGAAGGAAGCATTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTGTGAAGGAAGCCTTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120 Query 121 AATGATATTCGTGATCATGGTGTCGATAAGGCTAGTGGCATTGCAAAGT-TGACTGAACT 179 | |||||||||||||||| ||| ||||| |||| |||| || |||| | |||||||||| Sbjct 121 ATTGATATTCGTGATCATACTGTTGATAAAGCTACTGGCCTTTCAAA-TATGACTGAACT 179 Query 180 CATTAAAGGACACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTT-C-CA----CAG-G 232 ||||||||| |||||||||||||||||||||||||||||||||||| | || || | Sbjct 180 CATTAAAGGGCACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTTCCACAGGTTAAGAG 239 Query 233 -------T-T---AA--C--A-GAGA-CATCCATCATGAGGCTAAGAGAACCATCATTCT 275 | | || | | | | |||||||||||||||||| |||||||||||||| Sbjct 240 ATCCATCTCTCCCAAGGCTAACAATACCATCCATCATGAGGCTAATAGAACCATCATTCT 299 Query 276 CAAGGATAAGGCAACCATCCCTCCCGAGGCTGCTTATCGGGGTGCTAAGTCTACTTATAC 335 ||||| | ||||||||| |||||||||||||| |||| ||||||||||||| ||||| Sbjct 300 CAAGGCTGAGGCAACCAACCCTCCCGAGGCTGAGCATCGTGGTGCTAAGTCTAAATATAC 359 Query 336 CAAAATAAAACAAATTGAGCCTGACTGGGAGAATTTTATGAACATGCTTAAGACAAGGTT 395 || || ||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||| Sbjct 360 CATAAGAAAACGTATTGAGCATGATTGGGAAAATTTTATGAACATGCTTAAGACAAGGTT 419 Query 396 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGTATGATGA 455 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 420 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGCATAACGA 479 Query 456 AGGaaaaaaaTCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGGAAAAAAATCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 539 Query 516 AGATTTGATCGACAAGTTTTTCAGATTGTTTAACATGAGAAAATAA 561 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 540 AGATTTGATCGACAAGTTTTTCAGATACTTTAACATGAGAAAATAA 585 > Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 Length=711 Score = 110 bits (59), Expect = 2e-23 Identities = 149/192 (78%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 39 TGATGCGCA-TTCATATATCACTGCTGTGAAGGAAGCATTTCATGATGAACCTACAAAAT 97 ||||||| | ||||||| ||| |||||| ||| ||||||||||||||||||||||||||| Sbjct 321 TGATGCG-ACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAAT 379 Query 98 ATGAAGAGTTTATTAAACTCATGAATGATATTCGTGATCATGGTGTCGATAAGGCTAGTG 157 |||| || ||||||| ||| |||||||| || | || | ||||| ||||||| Sbjct 380 ATGAGGAAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTG 439 Query 158 GCATTGCAAAGTTG-ACTGAACTCATTAAAGGA-CACCCGAGGCTGCTTCGTGGTTTAAG 215 |||||| | | || | |||||||| |||| | ||| || ||||||| |||||| | Sbjct 440 TCATTGCTAGGGTGGAG-GAACTCATGAAAG-ATCACTTGAATCTGCTTCTTGGTTTCTG 497 Query 216 TTTCTTC-TTTC 226 | ||||| |||| Sbjct 498 TGTCTTCCTTTC 509 > Ahg921492 jgi|Araly1|921492|scaffold_102773.1 Length=579 Score = 106 bits (57), Expect = 2e-22 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 488 AGGTCGTTGATCTTCTCTATTATCATGAAGATTTGATCGACAAGTTTTTCAGATTGTTTA 547 ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||| Sbjct 485 AGGTCATTGATCTTCTCTATTATCATGAAGATTTGATTGACAAGTTCTTCAGATACTTTA 544 Query 548 ACATGAGAAAAT 559 |||||||||||| Sbjct 545 ACATGAGAAAAT 556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20489551293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5