BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27250.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912296 jgi|Araly1|912296|Al_scaffold_0001_2550                    448    2e-125
  Ahg912291 jgi|Araly1|912291|Al_scaffold_0001_2545                    134    6e-31 


> Ahg912296 jgi|Araly1|912296|Al_scaffold_0001_2550
Length=309

 Score =  448 bits (242),  Expect = 2e-125
 Identities = 278/295 (94%), Gaps = 4/295 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGGGAGGAGGAAGTAAACATGTTGGAGAAGGAAGTAAACCGAGGGCAACTAAAGAT  60
            |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct  1    ATGGTGGGAGGAGGAAGTAAACATGTTGGAGAAGGAAGTAAACCGAAGGCAAATATAGAT  60

Query  61   GACGCGTATGCATATCTTAGGGCTGTGAGGGCTAAATTTCATAATGATAGTAAAAAATAT  120
            || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  61   GATGCGTATGCATATCTTAGGGCTGTGAGGGCTAGATTTCATAATGATAGTAAAAAATAT  120

Query  121  GACGATTTTGTTGCGGTCATGACA-AATTTTAAAGCTCGAAGAATTGATAGGGATGGTTG  179
            || || |||||| | ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  121  GATGACTTTGTTACTGTCATGA-ATAATTTTAAAGCTCGAAGAATTGATAGGGATGGTTG  179

Query  180  CATAAAAGAGGTGGAACAACTGCTTAAAGGACATAGAGATTTGATTTCGGGTTTCAATGC  239
            |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct  180  CATAAAAGAGGTGGAACAACTGCTTAAAGGACATCGAGATTTGATTTCTGGTTTTAATGC  239

Query  240  ATTCTTACCAAAGTGTTTGGAGATAAAAAATTATTACT-TTGGGGCAGGAGAGGA  293
            |||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct  240  ATTCTTACCAAAGTGTTTGGAGATCAAAAATTATTA-TATTGGGGCAGGAGAGGA  293


> Ahg912291 jgi|Araly1|912291|Al_scaffold_0001_2545
Length=225

 Score =  134 bits (72),  Expect = 6e-31
 Identities = 80/84 (95%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  1   ATGGTGGGAGGAGGAAGTAAACATGTTGGAGAAGGAAGTAAACCGAGGGCAACTAAAGAT  60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct  1   ATGGTGGGAGGAGGAAGTAAACATGTTGGAGAAGGAAGTAAACCGAAGGCAAATATAGAT  60

Query  61  GACGCGTATGCATATCTTAGGGCT  84
           || |||||||||||||||||||||
Sbjct  61  GATGCGTATGCATATCTTAGGGCT  84



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5