BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27290.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472924 jgi|Araly1|472924|fgenesh2_kg.1__2878__AT1G27290.2 907 0.0
> Ahg472924 jgi|Araly1|472924|fgenesh2_kg.1__2878__AT1G27290.2
Length=892
Score = 907 bits (491), Expect = 0.0
Identities = 843/991 (85%), Gaps = 111/991 (11%)
Strand=Plus/Plus
Query 43 TTGCAGAAATTTCGATCGTTTTTGTTGTGTGTACAGAGAGATTATCGTGTTTTGTTGGCA 102
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGCAGAAATTTCAATCG-TTTTGTTGTGTGTACAGAGAGATTATCGTGTTTTGTTGGCA 59
Query 103 ATCGCCATTAAACCTTCTTC--CCTCTAACCCAATCAAATTTGCGGCTCTTTCTTTTATC 160
|||||||||||||||||||| | ||| |||||||| |||||||||||||||| ||||||
Sbjct 60 ATCGCCATTAAACCTTCTTCTTCTTCT-ACCCAATC-AATTTGCGGCTCTTTCCTTTATC 117
Query 161 TTCTCGCCTCGGTTTTAGCAAA-C--------CCTTTAGTTATCTTCTTCCTCAAGCAAT 211
||||| |||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 118 TTCTCTCCTCGGTTTTAGCAAACCATTTTTTTCCTTTCGTTATCTTCTTCCTCAAGCAAT 177
Query 212 TTTTCTTTTGGATTAGATTGGTGTTTTCTTTTGGTTTGTGTGGTGATGATGAGAAGGCAA 271
||| |||||||||| | | | || |||||||||||||||||||||
Sbjct 178 TTTCCTTTTGGATT--A----------C----AG--TG-GTGGTGATGATGAGAAGGCAA 218
Query 272 CGAGATGAACAACAATCTAGGGTTTTCTACGATCTATCATCTCTTGTTTTGAATCTTCTC 331
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 219 CGAGATGAACAACAATCTAGGGTTTTCTACGATCTATCAGCTCTTGTTTTGAATCTTCTC 278
Query 332 CGTTCTCCTCCTATGCCGATTTCTTTACCTGATCATTTCCCCGATCCGCCCGCTAGAATT 391
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 279 CGTTCTCCTCCTATGCCGATTTCTTTACCTGATCATTTTCCCGATCCACCGGCTAGAATT 338
Query 392 CGTCCTCCCTTTTCTTCGCATCGTTTTTCGTCTTCTTCGCCTTCTTTGGCTCATATTTCT 451
||||||||| |||||| || |||| | ||| | | |||||||||||||
Sbjct 339 CGTCCTCCC---TCTTCG--TC----TTCG-C--CTT---C--C-ATGGCTCATATTTCA 380
Query 452 CCGTCTGGATTCGCGTCGTTGCTGCTTGGTATATCTGTGGCTCTTATGCTATGTGGATCT 511
|| || || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 381 CCATCGGGGTTCGCGTCGTTGCTTCTTGGTATATCTGTGGCTCTTATGCTCTGTGGATCT 440
Query 512 GTGACTTTCTTCATCGGGTTTC-TCTTGATGCCTTGGGTTCTTGCTCTGATTTTGGTTTT 570
|||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||
Sbjct 441 GTGACTTTCTTCATCGGGTTTCTTC-TGATGCCTTGGGTTATTGCTCTGATTATGGTTTT 499
Query 571 CTATGTCGCTGGCATCGTTTCTGCCATTTCTATGGTCGGGAGGTCGATTCTCTGTTACGT 630
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 500 CTATGTCGCTGGCATCGTTTCCGCCATTTCTATGGTTGGGAGGTCGATTCTCTGTTACGT 559
Query 631 CTTGACGCCACCTTCTCCTTCCGGAAAGGAGATTTCTGAATGGAAGCTTCTGTGAAATGA 690
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
Sbjct 560 CTTGACGCCACCTTCTCCCTCCGGAAAAGAGATTTCTGATTGGAAGCTTCTGTGAA--G- 616
Query 691 TTAAACAACAGAGGTGAAGAATCTATACATCATCCGGAAGCAGAGCAGAGCGAAGCAGAA 750
| ||| ||| ||||||||||||||||| | || || | | | | |
Sbjct 617 T---------GAG---AAG---CTATACATCATCCGGAA-C-GA--AG--C-A-G-A-AC 651
Query 751 CaaaaaaaaGAAGAAGAAGGATTGATTATATAAACACATATATCCGATAGAGTTTTTCTA 810
||||||| || |||| | |||||||||||||| | |||||||| ||||||||||||||
Sbjct 652 CAAAAAA--GA-GAAG--G-ATTGATTATATAAATATATATATCCAATAGAGTTTTTCTA 705
Query 811 TGTTCTTTATCTGTATTTTGTTgggggggTTTGGGAAAATCATGTGGATATCAGGGAGTT 870
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 706 TGTTCGTTATCTGTATTTTGTTGGGGGG-TTTGGGAAAATCATGTGGATATCAGGGAGTT 764
Query 871 TTATATTTCTTTACATTTCGAAAAAAGAATTTTTCTATTTAACTACTGTTAGAAATAGAG 930
| | | | | | |||||||||||||| |||||||||||||||||||
Sbjct 765 T-A-A-------A-A----G------GAATTTTTCTATTTTACTACTGTTAGAAATAGAG 804
Query 931 AAGCCTTGTTATTTGTGCTTTCATGTATGTCGTTTTTATGTAACATGATCATTTCTTAAA 990
||||||| |||||||||||||||| |||||||| |||||||||||||| || || |||
Sbjct 805 AAGCCTTCATATTTGTGCTTTCATGGATGTCGTTATTATGTAACATGAT--TT-CTCAAA 861
Query 991 GCATACAAAAAGATTTTAGGATTTCTGTTGC 1021
|||||| ||||||||||||||||||||||||
Sbjct 862 GCATACCAAAAGATTTTAGGATTTCTGTTGC 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5