BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27300.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472926 jgi|Araly1|472926|fgenesh2_kg.1__2880__AT1G27300.1 1018 0.0
> Ahg472926 jgi|Araly1|472926|fgenesh2_kg.1__2880__AT1G27300.1
Length=767
Score = 1018 bits (551), Expect = 0.0
Identities = 720/795 (91%), Gaps = 37/795 (5%)
Strand=Plus/Plus
Query 12 CTCAAAAATGGTAGAGGTGCCGTGCCGTCAATAGATGTCACGTGTCCTGAC-TTGCCTTC 70
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 1 CTCAAAAATGGTGGAGGTGCCGTGCCGTCAATTGATGTCACGTGTCCTGACAATGCATTC 60
Query 71 TCAATACAAACAAAAATACTCTCTACCTaaaaaaaCACAATAAAC-AACA-AACGCATCT 128
||||||||||| |||||||||||||||||||||| ||||||||| |||| ||| |||||
Sbjct 61 TCAATACAAAC--AAATACTCTCTACCTAAAAAAA-ACAATAAACAAACAGAACACATCT 117
Query 129 TTGGAGCGGCGGTGAGATTAGAGAAGAAGGGTTTGTGAAATGGAGTCCAGTGAGGATGTG 188
|||||||| ||||||| || ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 118 TTGGAGCGTCGGTGAGGTTGGAGGAGAAGGGTTTGTGAAATGGAGTCGAGTGAGGATGTG 177
Query 189 GAGAATCTGAGTAGAGCTATTGAGAAGCTTCTTCA-TGAGAAGAGGAAGAGAGAAGCTTC 247
|||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||
Sbjct 178 GAGAATCTGAGTAGAGCTATCGAGAAACTTCTT-ACTGAGAAGAGGAAGAGAGAAGCTTC 236
Query 248 TGGTGACGCCTTCATTGAAGACG-CTGATGATCAGCTTTTCCTCTCTAGCCTTATCTCTC 306
||||||||| ||||||||||||| | |||||||||||||| |||||||| ||||||||||
Sbjct 237 TGGTGACGCTTTCATTGAAGACGAC-GATGATCAGCTTTTGCTCTCTAGGCTTATCTCTC 295
Query 307 AGTTGGAATCACCAAACCCCAAGGGGAAAGAAGATGTCATAACCGGagaagaagaagaaa 366
|||||||||||||||| |||| || || || | | | | || | | | || |
Sbjct 296 AGTTGGAATCACCAAAGTCCAA--GG-AA-AA-A-G-C---A--GGTG-TG-ATAA-CCA 340
Query 367 aagaagaagaaTCTGCAGATTCTTCACCATCCAAAGGAAAAAGCGAGGGCCAGAGACAAT 426
||||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 341 AAGAAGAAGAA---G-A-A-TCTTCACCATCCAAAGGAAAACGCGAGGGCCAGAGACAAT 394
Query 427 TGGAAGAAAGTATAGAAGAAATAGCTAAAGACATCAAGAAGGTGAAGAAGCAGAACAAAA 486
||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 395 TGGAAGAGAGTATAGAAGAATTAGCTAAAGACATCAAGAAGGTGAAGAAACAGAACACAA 454
Query 487 TAACCCATGTACTTCTCTCGGCTACGATCATCCTGACATTGGTTTGGCAGCTCTCTGAGT 546
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 455 TAACCCATGTACTTCTCTCGGCTGTGATCATCCTGACATTGACTTGGCAGCTCTCTGAGT 514
Query 547 ACTCCATGATTTTCATGTTGAAAGATAGAATAAGCCACCCAGTCAGATCCATCGGAGGTA 606
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ACTCGATGATTTTCATGTTGAAAGATAGAATAAGCCACCCAGTCAGATCCATCGGAGGTA 574
Query 607 TGCTTAATGGAATGTTCAAAGGTAAGTTACGTCCAATCAAGAACCAACTTGCGGGGACTT 666
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TGCTTAATGGGATGTTCAAAGGTAAGTTACGTCCAATCAAGAACCAACTTGCGGGGACTT 634
Query 667 CCAACTCCAATGACCAAAACAACCATGGGAATGGATCACACACTGGACCTCAACTTCAAG 726
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 635 CCAACTCCAATGACCAAAACAACCATGGGAATGGAACACAAATTGGACCTCAACTTCAAG 694
Query 727 TGCCCGAGCTGTTGCGAGAATTCGGTTTC---GACGATGAA-GAATGATAGCTTCCCTTT 782
|||||||| |||||||||||||||||||| ||||||||| || ||||| ||| |||||
Sbjct 695 TGCCCGAGTTGTTGCGAGAATTCGGTTTCAACGACGATGAATGA-TGATA-CTTTCCTTT 752
Query 783 GTGACTCAATAATAC 797
|||||||||||||||
Sbjct 753 GTGACTCAATAATAC 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5