BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27310.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921765 jgi|Araly1|921765|scaffold_103046.1 669 0.0
Ahg472998 jgi|Araly1|472998|fgenesh2_kg.1__2952__AT1G27970.1 267 1e-70
> Ahg921765 jgi|Araly1|921765|scaffold_103046.1
Length=412
Score = 669 bits (362), Expect = 0.0
Identities = 379/387 (98%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 95 ACG-AAGAAAGAGATGGATCCAGACGCTGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 153
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 11 ACGAAAG-AAGAGATGGATCCAGACGCAGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 69
Query 154 CACCTTCGATGCAAATCGTCCAGGGTTGGTTTCTCTATACCAAGAAGGATCCATGTTGAC 213
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 70 CACCTTCGATGCAAATCGTCCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGAC 129
Query 214 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCGGCCTCCC 273
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 130 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCAGCCTCCC 189
Query 274 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 249
Query 334 TGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 309
Query 394 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGACAT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 310 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGATAT 369
Query 454 ATTCAGGTTGAACTATGCCTGAGGAAT 480
|||||||||||||||||||||||||||
Sbjct 370 ATTCAGGTTGAACTATGCCTGAGGAAT 396
> Ahg472998 jgi|Araly1|472998|fgenesh2_kg.1__2952__AT1G27970.1
Length=657
Score = 267 bits (144), Expect = 1e-70
Identities = 307/383 (80%), Gaps = 21/383 (5%)
Strand=Plus/Plus
Query 105 AGATGGATCCAGACGCTGT-TGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGAT 163
|||||||||| |||||||| | | ||||| ||||| || || ||||| |||||||||||
Sbjct 72 AGATGGATCCCGACGCTGTAT-CTAAGGCCTTCGTCGAACATTACTATTCCACCTTCGAC 130
Query 164 GCAAATCGTCCAGGGT-TGGTTTCTCTATACCAAGAAGGATCCATGTTGACCTTCGAAGG 222
| || || | ||| | | | ||| ||||| |||| || ||| | |||||||||||
Sbjct 131 ACCAACCG-CGTCGGTCTCGCTGGTCTCTACCAGGAAGCTTCTATGCTCACCTTCGAAGG 189
Query 223 CCAGAAGATCC-AGG-GCTCTCAGAA-CATCGTCGCTAAGCTCACCGGC-C-TCCCTTTC 277
|| ||||||| ||| | || || || ||||||||||||||||||| | | |||| |||
Sbjct 190 TCAAAAGATCCAAGGAG-TC-CA-AAGCATCGTCGCTAAGCTCACC-TCTCTTCCC-TTC 244
Query 278 CAGCAGTGTAAGCA-CAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGTGG 336
|||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 245 CAGCAGTGCAAGCATC-ACATCTCCACCGTCGATTGTCAGCCTTCTGGTCCCGCTTCCGG 303
Query 337 TATGCTCGTCTTT-GTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGT 395
||||||||| ||| |||||||| || || |||||||| || ||| | ||| |||||||||
Sbjct 304 TATGCTCGT-TTTCGTCTCCGGTAACCTCCAGCTCGCCGGCGAAGAGCACACTCTCAAGT 362
Query 396 TCAGCCAGATGTTCCATTTGATATCGAATC-AG--GGAAACTACTACGTGTTCAATGACA 452
||||||||||||| || ||||| ||| | | |||| || ||||||||||| || |
Sbjct 363 TCAGCCAGATGTTTCACTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATA 422
Query 453 TATTCAGGTTGAACTATGCCTGA 475
|||||||||||||||| ||||||
Sbjct 423 TATTCAGGTTGAACTACGCCTGA 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5