BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27330.1
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472929 jgi|Araly1|472929|fgenesh2_kg.1__2883__AT1G27330.1 521 1e-147
Ahg472931 jgi|Araly1|472931|fgenesh2_kg.1__2885__AT1G27350.1 399 7e-111
> Ahg472929 jgi|Araly1|472929|fgenesh2_kg.1__2883__AT1G27330.1
Length=365
Score = 521 bits (282), Expect = 1e-147
Identities = 352/382 (92%), Gaps = 20/382 (5%)
Strand=Plus/Plus
Query 83 TTCTTCTCCGGTGTAATCATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGAAA 142
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 4 TTCTTCTCCGGTGTAATCATGACAACTTCAAAAAGACTCGCAGACAGGAAGATTGAGAAA 63
Query 143 TTCGACAAGAACATATTGAAAAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGTAAG 202
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 64 TTCGACAAGAACATATTAAAAAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCAAG 123
Query 203 GATTACCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTTGTTGTCATTGGATCATCT 262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 124 GATTACCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCATCT 183
Query 263 CTCTTCCAGATCATCAGGACCGCAACTAGTGGAGGAATGGCTTAAACCCAATCACATTCA 322
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 184 CTCTTCCAGATCATCAGGACCGCAACTAGTGGAGGAATGGCTTAAACCCTATCACATTCA 243
Query 323 AGCTGGAAGATTGCAATTCTCAAATTGATGAATCATCACTTTCTTCTCTTCTGACTTGTC 382
||||||||||| |||||||||||||| | | | || || | |||||||| |
Sbjct 244 AGCTGGAAGATCGCAATTCTCAAATT-------C-T---T--CT-CT-T-CTGACTTGCC 287
Query 383 TCtttttttCCCTTATACTGTAGAATGTGACTACTTTCTGTTGACTACATGTTATTGAAA 442
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 288 TCTTTTTC-CCCTTATACTGTAGAATGCGACTACTTTCTGTTGACTACATGTTAT-GAA- 344
Query 443 GAATTTTTGAGTCTTTTTCTAA 464
||||||| ||||||||||||||
Sbjct 345 GAATTTT-GAGTCTTTTTCTAA 365
> Ahg472931 jgi|Araly1|472931|fgenesh2_kg.1__2885__AT1G27350.1
Length=385
Score = 399 bits (216), Expect = 7e-111
Identities = 308/350 (88%), Gaps = 15/350 (4%)
Strand=Plus/Plus
Query 83 TTCTTCTCCGGTGTAATCATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGAAA 142
||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 42 TTCTTCTCCGGCGTAATCATGACAACCTCAAAGCGACTCGCAGACAGGAAGATTGAGAAA 101
Query 143 TTCGACAAGAACATATTGAAAAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGTAAG 202
|||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 102 TTCGACAAGAACATTTTAAAAAGAGGTTTTGTTCCTGAGACCACCACCAAGAAGGGCAAG 161
Query 203 GATTACCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTTGTTGTCATTGGATCATCT 262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 162 GATTACCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCATCT 221
Query 263 CTCTTCCAGATCATCAGGACCGCAACTAGTGGAGGAATGGCTTAAACCCAATCACATTCA 322
||||||||||||||||||||||||||||| ||||| ||||| |||||| ||| ||| |||
Sbjct 222 CTCTTCCAGATCATCAGGACCGCAACTAGCGGAGGCATGGCATAAACCAAATAACAGTCA 281
Query 323 AGCTGGAAGATTGCAATTCTCAAATTG-ATGAATCATCACTTTCT-TCTCTTCTGACTTG 380
|||| ||||| || || ||||| || | ||||| || || || ||||| | ||
Sbjct 282 AGCTAGAAGAAA-CAGTTTTCAAAATGGA-GAATCTTC--TT-CTGTCTCT-C---CT-- 330
Query 381 TCTCtttttttC-CCTTATACTGTAGAATGTGACTACTTTCTGTTGACTA 429
||||||| || ||||||||||||||||||| | |||||||||| ||||
Sbjct 331 -CTCTTTTACTCTCCTTATACTGTAGAATGTGTCAACTTTCTGTTTACTA 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17322637406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5