BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27350.1
Length=497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472931 jgi|Araly1|472931|fgenesh2_kg.1__2885__AT1G27350.1 560 3e-159
Ahg472929 jgi|Araly1|472929|fgenesh2_kg.1__2883__AT1G27330.1 392 1e-108
> Ahg472931 jgi|Araly1|472931|fgenesh2_kg.1__2885__AT1G27350.1
Length=385
Score = 560 bits (303), Expect = 3e-159
Identities = 361/388 (93%), Gaps = 7/388 (2%)
Strand=Plus/Plus
Query 63 CTCGCGATCGTCATTTCAATTTCTAATTAGCTTTCCTGGTGTTTCTTCTCCGGCGTAATC 122
||||||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||
Sbjct 1 CTCGCGATCGTCATTTCAATTCCTTATTCGC-TTCCTAGTGTTTCTTCTCCGGCGTAATC 59
Query 123 ATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGAAATTCGACAAAAACATTTTA 182
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 60 ATGACAACCTCAAAGCGACTCGCAGACAGGAAGATTGAGAAATTCGACAAGAACATTTTA 119
Query 183 AAGAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCAAGGATTATCCC-GTTGGTCC 241
|| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 120 AAAAGAGGTTTTGTTCCTGAGACCACCACCAAGAAGGGCAAGGATTA-CCCTGTTGGTCC 178
Query 242 CATCCTTCTTGGCTTCTTTGTCTTTGTTGTCATTGGATCATCTCTCTTTCAGATCATTAG 301
|||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 179 CATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCATCTCTCTTCCAGATCATCAG 238
Query 302 GACTGCAACTAGCGGAGGCATGGCATAAACCAAA-ACACAGTCAAGCTAGAAGAAGCAGT 360
||| |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 239 GACCGCAACTAGCGGAGGCATGGCATAAACCAAATA-ACAGTCAAGCTAGAAGAAACAGT 297
Query 361 TTTCAAAATGTAGAATCTTCTTCTG--TCTCCTTTCTTTTTCTCTCCTTATACTGTAGAA 418
|||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct 298 TTTCAAAATGGAGAATCTTCTTCTGTCTCTCCTCTCTTTTACTCTCCTTATACTGTAGAA 357
Query 419 TGTGTCAACTTTCTGTTTACTATATCAT 446
||||||||||||||||||||||||||||
Sbjct 358 TGTGTCAACTTTCTGTTTACTATATCAT 385
> Ahg472929 jgi|Araly1|472929|fgenesh2_kg.1__2883__AT1G27330.1
Length=365
Score = 392 bits (212), Expect = 1e-108
Identities = 326/378 (86%), Gaps = 19/378 (5%)
Strand=Plus/Plus
Query 103 GTTTCTTCTCCGGCGTAATCATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGA 162
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2 GTTTCTTCTCCGGTGTAATCATGACAACTTCAAAAAGACTCGCAGACAGGAAGATTGAGA 61
Query 163 AATTCGACAAAAACATTTTAAAGAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCA 222
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 AATTCGACAAGAACATATTAAAAAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCA 121
Query 223 AGGATTATCCC-GTTGGTCCCATCCTTCTTGGCTTCTTTGTCTTTGTTGTCATTGGATCA 281
||||||| ||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 122 AGGATTA-CCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCA 180
Query 282 TCTCTCTTTCAGATCATTAGGACTGCAACTAGCGGAGGCATGGCATAAACCAAAACACAG 341
|||||||| |||||||| ||||| |||||||| ||||| ||||| |||||| | ||||
Sbjct 181 TCTCTCTTCCAGATCATCAGGACCGCAACTAGTGGAGGAATGGCTTAAACCCTATCACAT 240
Query 342 TCAAGCTAGAAGAA-GCAGTTTTCAAAATGTAGAATCTTCTTCTGTCT--CCTTTCTTTT 398
||||||| ||||| ||| || ||||| | | ||| |||||| || ||| |||||
Sbjct 241 TCAAGCTGGAAGATCGCAATTCTCAAATTCT----TCT-CTTCTGACTTGCCT--CTTTT 293
Query 399 TCTCTCCTTATACTGTAGAATGTGTCAACTTTCTGTTTACTATATCATGTAATGAAGATT 458
|| | ||||||||||||||||| | | |||||||||| |||| ||||| ||||||| |
Sbjct 294 TC-C-CCTTATACTGTAGAATGCGACTACTTTCTGTTGACTA---CATGTTATGAAGAAT 348
Query 459 ATTTGAGT-TTTTTATAA 475
||||||| ||||| |||
Sbjct 349 -TTTGAGTCTTTTTCTAA 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18047593597
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5