BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27360.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921770 jgi|Araly1|921770|scaffold_103051.1 1792 0.0
Ahg472939 jgi|Araly1|472939|fgenesh2_kg.1__2893__AT1G27370.2 1478 0.0
> Ahg921770 jgi|Araly1|921770|scaffold_103051.1
Length=1221
Score = 1792 bits (970), Expect = 0.0
Identities = 1150/1234 (93%), Gaps = 23/1234 (2%)
Strand=Plus/Plus
Query 150 AAATCAACCCATATCGTGAATGGACTGCAACATGGTATCTTCGTCCCAGTGGGATTGGGA 209
||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 3 AAATCAACCCATATCTTGAATGGACTGCAGCATGGTATCTTCGTTCCAGTGGGACTGGGA 62
Query 210 GCA-TTTGATCATGTCCAATCCGTCAAGGACTG-AAGATGACAGCAAACAGCTACCTACT 267
| | ||||||||||||||||||||||||| ||| || |||||||||| |||| | |||||
Sbjct 63 G-AGTTTGATCATGTCCAATCCGTCAAGGGCTGTAA-ATGACAGCAAGCAGCAATCTACT 120
Query 268 GAGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTT 327
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTGGGAAATTGAAAAAGGTGACGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTT 180
Query 328 GAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACACTGCTGTATCGAAAAGCTCA 387
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 181 GAGAGAGTCAGTAGTGGCTCTGCCACCAGTTTCTGGCGCACTGCTGTATCAAAAAGCTCA 240
Query 388 CAGTCGACCTCTATCAACTCATCATCTCCCGAAGCCAAACGATGCAAGCTTGCATCAGAA 447
||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CAGTCGACCTCTATCCATTCATCATCTCCCGAAGTCAAACGATGCAAGCTTGCATCAGAA 300
Query 448 AGTTCCCCTGGAGATTCTTGCAGCAACATAGACTTTGTCCAGGTGAAGGC-TCCCACAGC 506
||||| ||||||||||||||||||||| |||| ||||||||| | ||||| | |||||||
Sbjct 301 AGTTCTCCTGGAGATTCTTGCAGCAACGTAGATTTTGTCCAGTTTAAGGCAT-CCACAGC 359
Query 507 TCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGAC 566
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGAC 419
Query 567 ATACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTTTCTATGAAGTT 626
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 ATACTCTGAAGAATATTGGGGTAGAAACAATAATGAAATTTCAGCAGTTTCTATGAAGTT 479
Query 627 GTTAACTCCATCTGTTGTCGCTGGGAAA--T-CCAAATTGTGTGGTCAGAGCATGCCAGT 683
||| ||||||||||||||| || ||||| | |||||| ||| | ||||||||||| |||
Sbjct 480 GTTGACTCCATCTGTTGTCACTCGGAAAAATTCCAAAT-GTG-G-TCAGAGCATGCTAGT 536
Query 684 CCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 743
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCCGCGTTGCCAAATTGATGGTTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 596
Query 744 TAAGCACAAAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGA 803
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGT 656
Query 804 ACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATG-CTGTCTCTGAATTTGATGAGAAGA 862
|||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 657 ACGTCGATTCTGCCAACAGTGTAGCAGGTTCCATGAC-GTCTCTGAATTTGATGATAAGA 715
Query 863 AACGAAGCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAGCCACAAGGAG 922
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 AACGGAGCTGTCGAAAACGTCTTTCTCATCATAATGCCAGGCGTCGTAAGCCACAAGGAG 775
Query 923 TATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATACAAATATGTTGTGGA 982
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 TATTTTCAGTGAATCCAGAGAGGCTGTATGATCGAAGACAGCATACAAATATGTTGTGGA 835
Query 983 ATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAATAACACTTATG 1042
||| | |||| |||||| ||||||| |||||| ||| ||||||||||| ||||||||
Sbjct 836 ATGAGTTGTCACTTAACACGAGATCAGAAGAATTGTGTGAATGGGGTAC---CACTTATG 892
Query 1043 ATACAAAGCCTAGACAAACGGAAAAAAGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 1102
|||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 893 ATACAAAGCCTACACAGACAGAAAAAGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 952
Query 1103 CTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTTCTCTACA-TCTCAAACCTCAGGT 1161
||||||||||| |||||||||||| ||||||||||||||| ||| | ||||||||||||
Sbjct 953 CTGAGGACCAGTTGGTTGCTAGTAACAGCCGTATGTTCTCGACAGT-TCAAACCTCAGGC 1011
Query 1162 GGGTTCCCAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGATGTGGGAGAATACTCA 1221
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1012 GGGTTCCCAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGCTGTGGGAGAATACTCA 1071
Query 1222 GGAGTCCTCCATGAATCTCAAGATATCCACCGTGCTCTCTCTCTTCTGTCAACCTCTTCG 1281
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1072 GGAGTCCTCCATGAATCTCAAGATTTCCACCGTGCTCTCTCTCTTCTGTCAACCTCTTCG 1131
Query 1282 GATCCCCTGGCCCAACCACATGTGCAGCCATTTTCTCTACTCTGTTCATATGATGTTGTA 1341
||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 1132 GATCCCCTGACCCAACCACATGCGCAGCCATTCTCTCCACTCTGTTCATATGATGTTGTA 1191
Query 1342 CCAAAATAGATGAGTAAGTAATGTGTAATTTGTA 1375
||||||||||| | | |||||||||||||||||
Sbjct 1192 CCAAAATAGAT-A--A-GTAATGTGTAATTTGTA 1221
> Ahg472939 jgi|Araly1|472939|fgenesh2_kg.1__2893__AT1G27370.2
Length=1521
Score = 1478 bits (800), Expect = 0.0
Identities = 1040/1155 (90%), Gaps = 20/1155 (2%)
Strand=Plus/Plus
Query 140 TAGGTCTATGAAATCAACCCATATCGTGAATGGACTGCAACATGGTATCTTCG-TCCCAG 198
||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||| |
Sbjct 229 TAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTCCGTTCCC-G 287
Query 199 TGGGATTGGGAGCATTTGATCATGTCCAATCCGTCAAGGACTGAAGATGACAGCAAA--C 256
||||| |||||| |||||||||||||||||||||||| ||||||| |||| | ||| |
Sbjct 288 TGGGACTGGGAGAATTTGATCATGTCCAATCCGTCAAAGACTGAAAATGA-A-AAAAGGC 345
Query 257 AGCTACCTACTGAGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATT 316
||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 346 AGCAATCTACTGAGTGGGAATTTGAAAAAGGTGATGGAATTGAATCTATAGTTCCAGATT 405
Query 317 TCTCAGGCCTTGAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACACTGCTGTAT 376
||| ||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 406 TCTTAGGCCTTGAGAAAGTCAGTAGTGTCTCTGCCACTAGTTTCTGGCACACTGCTGTAT 465
Query 377 CGAAAAGCTCACAGTCGACCTCTATCAACTCATCATCTCCCGAAGCCAAACGATGCAAGC 436
| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 466 CAAAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGTCAAACGATGCAATC 525
Query 437 TTGCATCAGAAAGTTCCCCTGGAGATTCTTGCAGCAACATAGACTTTGTCCAGGTGAAGG 496
|||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 526 TTGCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTGTCCAGGTGAAGG 585
Query 497 C-TCCCACAGCTCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTA 555
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 586 CAT-CCACAGCTCTCGAGGTATCTGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTA 644
Query 556 GGAAAGCGGACATACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTT 615
||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||
Sbjct 645 GGAAAACGGACATACTCTGAAGAATTTTGGGGTAGCAACAATAATGACATTTCAGCAGTT 704
Query 616 TCTATGAAGTTGTTAACTCCATCTGTTGTCGCT-GG--GAAATCCAAATTGTGTGGTCAG 672
|||||||| ||||| |||||||||||||| ||| || |||| |||||| ||||||||||
Sbjct 705 TCTATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAG 764
Query 673 AGCATGCCAGTCCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAG 732
||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 765 AGCATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTGCTAAG 824
Query 733 GGTTATCATCGTAAGCACAAAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAGCGTG 792
| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 825 GATTATCATCGCAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTATTGTG 884
Query 793 AGTGGCCTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCTGAATTT 852
||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||
Sbjct 885 AGTGGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTTCATGCTGTATCAGAATTT 944
Query 853 GATGAGAAGAAACGAAGCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAG 912
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 945 GATGAGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGAAAG 1004
Query 913 CCACAAGGAGTATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATACAAAT 972
||||||||||||||| || ||||| | ||||||||||| |||||||||||||| |||| |
Sbjct 1005 CCACAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTACGATCGAAGACAGCACACAAGT 1064
Query 973 ATGTTGTGGAATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAAT 1032
||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 1065 ATGTTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATGCATGGGGTAC- 1123
Query 1033 AACACTTATGATACAAAGCCTAGACAAACGGAAAAAAGCTTTACTCTGAGCTTCCAGAGA 1092
||||||||| |||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct 1124 --CACTTATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGA 1181
Query 1093 GGTAATGGCTCTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTT-CTCTACATCTCA 1151
||||||||||||||||| |||| | ||||||||||||||| | | || |||| | | |||
Sbjct 1182 GGTAATGGCTCTGAGGAGCAGCAGTTTGCTAGTAGCAGCC-TCTCTTTCTCTGCGTTTCA 1240
Query 1152 AACCTCAGGTGGGTTCCCAGCAGG-AAAGTCCAA-GTTTCAACTTCATGGCGAAGATGTG 1209
|||||| || |||||||||||||| ||| ||||| ||| ||||||| || | ||| ||||
Sbjct 1241 AACCTCTGGCGGGTTCCCAGCAGGGAAA-TCCAACGTT-CAACTTCCTGACAAAGGTGTG 1298
Query 1210 GGAGAATACTCAGGAGTCCTCCATGAATCTCAAGATATCCACCGTGCTCTCTCTCTTCTG 1269
||||||| |||||||| ||||||||||||||| ||| || || |||||||||||||||||
Sbjct 1299 GGAGAATGCTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTG 1358
Query 1270 TCAACCTCTTCGGAT 1284
||||| ||||||||
Sbjct 1359 TCAACGACTTCGGAT 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5