BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27370.1
Length=2727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472939 jgi|Araly1|472939|fgenesh2_kg.1__2893__AT1G27370.2 2047 0.0
Ahg921770 jgi|Araly1|921770|scaffold_103051.1 1351 0.0
> Ahg472939 jgi|Araly1|472939|fgenesh2_kg.1__2893__AT1G27370.2
Length=1521
Score = 2047 bits (1108), Expect = 0.0
Identities = 1247/1312 (95%), Gaps = 18/1312 (1%)
Strand=Plus/Plus
Query 1254 ATAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTTCGTTCCCG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 228 ATAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTCCGTTCCCG 287
Query 1314 TGGGACTGGGAGAATTTGATCATGTCCAATCAGTCGAAGACTGAAAATGaaaaaaaaCAG 1373
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 288 TGGGACTGGGAGAATTTGATCATGTCCAATCCGTCAAAGACTGAAAATGAAAAAAGGCAG 347
Query 1374 CAATCTACTGAGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTC 1433
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 348 CAATCTACTGAGTGGGAATTTGAAAAAGGTGATGGAATTGAATCTATAGTTCCAGATTTC 407
Query 1434 TTAGGCTTTGAGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACACTGCCGTATCA 1493
|||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 408 TTAGGCCTTGAGAAAGTCAGTAGTGTCTCTGCCACTAGTTTCTGGCACACTGCTGTATCA 467
Query 1494 AAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTT 1553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 468 AAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGTCAAACGATGCAATCTT 527
Query 1554 GCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTCTCCAGGTGAAACCA 1613
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 528 GCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTGTCCAGGTGAAGGCA 587
Query 1614 TCCACAGCTCTCGAGGTACCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGA 1673
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 588 TCCACAGCTCTCGAGGTATCTGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGA 647
Query 1674 AAGCGGACATACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCT 1733
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 648 AAACGGACATACTCTGAAGAATTTTGGGGTAGCAACAATAATGACATTTCAGCAGTTTCT 707
Query 1734 ATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAGAGC 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 ATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAGAGC 767
Query 1794 ATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGAT 1853
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 768 ATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTGCTAAGGAT 827
Query 1854 TATCATCGCAAGCATAGAGTCTGCGAAACGCATTCAAAGTGCCCAAAAGTTGTTGTGAGT 1913
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 828 TATCATCGCAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTATTGTGAGT 887
Query 1914 GGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCAGAATTTGAT 1973
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 888 GGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTTCATGCTGTATCAGAATTTGAT 947
Query 1974 GAAAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCA 2033
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 948 GAGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGAAAGCCA 1007
Query 2034 CAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTTCGATCGAAGACAGCATACAAGTATG 2093
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1008 CAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTACGATCGAAGACAGCACACAAGTATG 1067
Query 2094 TTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATACATGGGGTACCACT 2153
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1068 TTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATGCATGGGGTACCACT 1127
Query 2154 TATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAAT 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAAT 1187
Query 2214 GGCTCTGAGGACCAACTGTTTACTGGTAGCACCCTCTCTTTCTCTGCGTTTCAAACATCT 2273
||||||||||| || | |||| || |||||| |||||||||||||||||||||||| |||
Sbjct 1188 GGCTCTGAGGAGCAGCAGTTTGCTAGTAGCAGCCTCTCTTTCTCTGCGTTTCAAACCTCT 1247
Query 2274 GGTGGGTTCTCAGCAGGGAAATCCAACATTCAACTTCCAGACAAAGGTGTGGGAGAATGC 2333
|| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1248 GGCGGGTTCCCAGCAGGGAAATCCAACGTTCAACTTCCTGACAAAGGTGTGGGAGAATGC 1307
Query 2334 TCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAACTACT 2393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1308 TCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAACGACT 1367
Query 2394 TCGGATTCACAAGGGATCAAACACACTCCCGTGGCCGAACCACCGCCAATATTTGGCACT 2453
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1368 TCGGATTCACAAGGGATCAAACACAATCCCGTGGCTGAACCACCGCCAATATTTGGCACT 1427
Query 2454 TTCCCTAGTCATTTCATCTGAAAGAGTTAAAAAATGCGAAGTCACTCCATAAAAAGTCGG 2513
||||||| ||||||||| ||||||||| || | |||||||||||||||||||||||
Sbjct 1428 TTCCCTACTCATTTCATATGAAAGAGT-AA-----G-GAAGTCACTCCATAAAAAGTCGG 1480
Query 2514 GTTGCATCATCCGATGGAGTTTGACAGTTTGTTTTCAAATAAAATAAAAATG 2565
||||||| || ||||||| | || ||||||||||||||||||||||
Sbjct 1481 GTTGCAT--TC-GATGGAG-----C--TT-GTTTTCAAATAAAATAAAAATG 1521
> Ahg921770 jgi|Araly1|921770|scaffold_103051.1
Length=1221
Score = 1351 bits (731), Expect = 0.0
Identities = 1014/1148 (88%), Gaps = 29/1148 (3%)
Strand=Plus/Plus
Query 1265 AAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTTCGTTCCCGTGGGACTGGGA 1324
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 3 AAATCAACCCATATCTTGAATGGACTGCAGCATGGTATCTTCGTTCCAGTGGGACTGGGA 62
Query 1325 GAATTTGATCATGTCCAATCAGTCGAA-GACTGAAAATGaaaaaaaaCAGCAATCTACTG 1383
|| ||||||||||||||||| ||| || | ||| |||||| | || |||||||||||||
Sbjct 63 GAGTTTGATCATGTCCAATCCGTC-AAGGGCTGTAAATGACAGCAAGCAGCAATCTACTG 121
Query 1384 AGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTCTTAGGCTTTG 1443
|||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||| |||
Sbjct 122 AGTGGGAAATTGAAAAAGGTGACGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTTG 181
Query 1444 AGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACACTGCCGTATCAAAAAGCTCGC 1503
||| |||||||||||||||||| || |||||||||| |||||| |||||||||||||| |
Sbjct 182 AGAGAGTCAGTAGTGGCTCTGCCACCAGTTTCTGGCGCACTGCTGTATCAAAAAGCTCAC 241
Query 1504 AGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTTGCATCACAAA 1563
|||||||||||||| | |||||||||||||| | |||||||||||| ||||||||| |||
Sbjct 242 AGTCGACCTCTATCCATTCATCATCTCCCGAAGTCAAACGATGCAAGCTTGCATCAGAAA 301
Query 1564 GTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTCTCCAGGTGAAACCATCCACAGCTC 1623
|||| ||||||||||||| ||||||| |||||||| ||||| | || ||||||||||||
Sbjct 302 GTTCTCCTGGAGATTCTTGCAGCAACGTAGATTTTGTCCAGTTTAAGGCATCCACAGCTC 361
Query 1624 TCGAGGTA-CCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGAAAGCGGACA 1682
||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 CCGAGGTATCC-GTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGACA 420
Query 1683 TACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCTATGAATTTG 1742
||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||| |||
Sbjct 421 TACTCTGAAGAATATTGGGGTAGAAACAATAATGAAATTTCAGCAGTTTCTATGAAGTTG 480
Query 1743 TTGACTCCATCTGTTGTTGCTCGGAAGAAA-ACCAAATCGTGTGGTCAGAGCATGCAAGT 1801
||||||||||||||||| ||||||| ||| ||||| |||||||||||||||| |||
Sbjct 481 TTGACTCCATCTGTTGTCACTCGGAA-AAATTCCAAA---TGTGGTCAGAGCATGCTAGT 536
Query 1802 TCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGATTATCATCG 1861
|||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||
Sbjct 537 CCCGCGTTGCCAAATTGATGGTTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCG 596
Query 1862 CAAGCATAGAGTCTGCGAAACGCATTCAAAGTGCCCAAAAGTT-GTTGTGAGTGGCCTGG 1920
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 597 TAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAG-CGTGAGTGGCCTGG 655
Query 1921 AACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATG-CTGTCTCAGAATTTGATGAAAAG 1979
|||||| |||||||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 656 TACGTCGATTCTGCCAACAGTGTAGCAGGTTCCATGAC-GTCTCTGAATTTGATGATAAG 714
Query 1980 AAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCACAAGGA 2039
||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 715 AAACGGAGCTGTCGAAAACGTCTTTCTCATCATAATGCCAGGCGTCGTAAGCCACAAGGA 774
Query 2040 GTATTTCCACTGAATTCAGAGAGGGTGT-TCGATCGAAGACAGCATACAAGTATGTTGTG 2098
|||||| || ||||| |||||||| ||| | ||||||||||||||||||| |||||||||
Sbjct 775 GTATTTTCAGTGAATCCAGAGAGGCTGTAT-GATCGAAGACAGCATACAAATATGTTGTG 833
Query 2099 GAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTAT-ACATGGGGTACCACTTATG 2157
||||| |||||| |||||||||||||| |||||| || | | |||||||||||||||||
Sbjct 834 GAATGAGTTGTCACTTAACACGAGATCAGAAGAATTGTGTGA-ATGGGGTACCACTTATG 892
Query 2158 AGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 2217
| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 893 ATACAAAGCCTACACAGACAGAAAAAGGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCT 952
Query 2218 CTGAGGACCAACTGTTTACTGGTAGCACCC-TCTCTTTCTCTG-C-GTTTCAAACATCTG 2274
|||||||||| || || || ||| || || | | || ||| | | ||| ||||| || |
Sbjct 953 CTGAGGACCAGTTGGTTGCTAGTAACAGCCGTATGTT-CTC-GACAGTT-CAAACCTCAG 1009
Query 2275 GTGGGTTCTCAGCAGGGAAA-TCCAACATTCAACTTCCA-GACAAAGGTGTGGGAGAATG 2332
| |||||| ||||||| ||| ||||| ||||||||| | | | ||| |||||||||||
Sbjct 1010 GCGGGTTCCCAGCAGG-AAAGTCCAAGTTTCAACTTC-ATGGCGAAGCTGTGGGAGAATA 1067
Query 2333 CTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAAC-TA 2391
|||||||| ||||||||||||||| |||||| || |||||||||||||||||||||| |
Sbjct 1068 CTCAGGAGTCCTCCATGAATCTCAAGATTTCCACCGTGCTCTCTCTCTTCTGTCAACCT- 1126
Query 2392 CTTCGGAT 2399
||||||||
Sbjct 1127 CTTCGGAT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102881751745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5