BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27380.2 Length=639 Score E Sequences producing significant alignments: (Bits) Value Ahg313461 jgi|Araly1|313461|fgenesh1_pm.C_scaffold_1002241 619 6e-177 > Ahg313461 jgi|Araly1|313461|fgenesh1_pm.C_scaffold_1002241 Length=492 Score = 619 bits (335), Expect = 6e-177 Identities = 431/476 (91%), Gaps = 11/476 (2%) Strand=Plus/Plus Query 2 TTGATATTGCCTTTTTCGTTAGGGTGTTCAACGCAATCTTGCGTCGCTGTGGCCACTACT 61 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 13 TTGATATTGCCGTTTTCGTTAGGGTGTTCTACGCAATCTTGCGTCGCTGTGGCCACTACT 72 Query 62 CATCAACAAAAGAAACCAAACCAACTCATCAAGAGAAGAGAAGAAAGTCATGAGAATGGA 121 |||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||| Sbjct 73 CATCAACACAAGAAACCAAACCAACTCATCAAGAGAAGAGAGGAAGGTGATGAGAATGGC 132 Query 122 TCATTTGAAAAAGAATACACAAAGATGGACAGAAA-CGGTGCTAATATGTTAGATGGAAG 180 |||||| |||||||||||||||||||||||| | | | |||| ||||| | ||||||||| Sbjct 133 TCATTTAAAAAAGAATACACAAAGATGGACA-ATAGCAGTGCAAATATCTCAGATGGAAG 191 Query 181 AGTAGAAAGTGATGCAAAGGGCTCATTTAGAAAGGATTACACAAAGATGGAGAACAACAA 240 |||||||||||||| ||| |||||||||| ||| || |||||||||||||| |||||||| Sbjct 192 AGTAGAAAGTGATGAAAATGGCTCATTTAAAAAAGACTACACAAAGATGGACAACAACAA 251 Query 241 CAAC------GGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAG 294 |||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 252 CAACAACAATGGTGCTAATATCTCAGATGGTATCTACAGAATTATACGAAGCTTCAAGAG 311 Query 295 TTTCTCGCACTTTTTCATACGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGA 354 |||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| || Sbjct 312 TTTCTCTCACTTTTTCATTCGTTACGAAGAGGAAACGAAAGAGAGAGAGGCGGAGATTGA 371 Query 355 GATAGGATTTCCAACGGACGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACCATGAC 414 |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 372 GATAGGATATCCGACGGAGGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACGATGAC 431 Query 415 CACTTTCGACAACACCTCCTCATCTTTTCCATTCTCCGG-TTTCCATCTCACCGGC 469 |||||| ||||| |||||||||||||||||||| |||| |||| ||||||| ||| Sbjct 432 CACTTTTGACAAGTCCTCCTCATCTTTTCCATTCGCCGGCTTTC-ATCTCAC-GGC 485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23407471038 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5