BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27380.2
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313461 jgi|Araly1|313461|fgenesh1_pm.C_scaffold_1002241 619 6e-177
> Ahg313461 jgi|Araly1|313461|fgenesh1_pm.C_scaffold_1002241
Length=492
Score = 619 bits (335), Expect = 6e-177
Identities = 431/476 (91%), Gaps = 11/476 (2%)
Strand=Plus/Plus
Query 2 TTGATATTGCCTTTTTCGTTAGGGTGTTCAACGCAATCTTGCGTCGCTGTGGCCACTACT 61
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 13 TTGATATTGCCGTTTTCGTTAGGGTGTTCTACGCAATCTTGCGTCGCTGTGGCCACTACT 72
Query 62 CATCAACAAAAGAAACCAAACCAACTCATCAAGAGAAGAGAAGAAAGTCATGAGAATGGA 121
|||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 73 CATCAACACAAGAAACCAAACCAACTCATCAAGAGAAGAGAGGAAGGTGATGAGAATGGC 132
Query 122 TCATTTGAAAAAGAATACACAAAGATGGACAGAAA-CGGTGCTAATATGTTAGATGGAAG 180
|||||| |||||||||||||||||||||||| | | | |||| ||||| | |||||||||
Sbjct 133 TCATTTAAAAAAGAATACACAAAGATGGACA-ATAGCAGTGCAAATATCTCAGATGGAAG 191
Query 181 AGTAGAAAGTGATGCAAAGGGCTCATTTAGAAAGGATTACACAAAGATGGAGAACAACAA 240
|||||||||||||| ||| |||||||||| ||| || |||||||||||||| ||||||||
Sbjct 192 AGTAGAAAGTGATGAAAATGGCTCATTTAAAAAAGACTACACAAAGATGGACAACAACAA 251
Query 241 CAAC------GGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAG 294
|||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 252 CAACAACAATGGTGCTAATATCTCAGATGGTATCTACAGAATTATACGAAGCTTCAAGAG 311
Query 295 TTTCTCGCACTTTTTCATACGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGA 354
|||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 312 TTTCTCTCACTTTTTCATTCGTTACGAAGAGGAAACGAAAGAGAGAGAGGCGGAGATTGA 371
Query 355 GATAGGATTTCCAACGGACGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACCATGAC 414
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 372 GATAGGATATCCGACGGAGGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACGATGAC 431
Query 415 CACTTTCGACAACACCTCCTCATCTTTTCCATTCTCCGG-TTTCCATCTCACCGGC 469
|||||| ||||| |||||||||||||||||||| |||| |||| ||||||| |||
Sbjct 432 CACTTTTGACAAGTCCTCCTCATCTTTTCCATTCGCCGGCTTTC-ATCTCAC-GGC 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5