BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27385.4 Length=765 Score E Sequences producing significant alignments: (Bits) Value Ahg472942 jgi|Araly1|472942|fgenesh2_kg.1__2896__AT1G27385.1 935 0.0 > Ahg472942 jgi|Araly1|472942|fgenesh2_kg.1__2896__AT1G27385.1 Length=777 Score = 935 bits (506), Expect = 0.0 Identities = 575/608 (95%), Gaps = 5/608 (1%) Strand=Plus/Plus Query 1 ATGGCTTGCAAAACGATTTTGCGTTCCGTTTTCGTATCGGAATCACGACGGACTTCCGGC 60 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || Sbjct 17 ATGGCTTGCAAAACGATTTTGCGTTCCGTTTTCGTATCGGAATCACGTCGAACTTCCAGC 76 Query 61 GCACGTAGATGCTTCTTTCTCCCTCCTTCTCCAGCATCAGTTCCAGTCCATGGTTTGTTC 120 ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 77 GCAAGTAGATGCTTCTTTCTCCCTCCTTCTCCAGTATCAGTTCCGGTCCATGGTTTGTTC 136 Query 121 CCGGCGCCAAAGAGTCTATGTTTCAATGGTTTTGCATCTGTTCCCGAGCGGGCT-ACTCG 179 ||||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||||| Sbjct 137 CCGGCGCCAAAGAGTCTCTGTTTCAGTGGTTTTGCATCTGTTCCCGAGCGGG-TCACTCG 195 Query 180 GCTTAATTGCAGCCATAACGATCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAA 239 ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 196 GCTTAATTGCAGCCATAACGATCAATCTGATCAAGGCCCGCCCCAAGAAGCTGTTCTCAA 255 Query 240 GGCAATCTC---AGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTAT 296 |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 256 GGCAATTTCAGAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAATATGATTAT 315 Query 297 TGGAGGCACTGTGGCTGATGATTCTGCTAAAGATTGGCTCGAACTTGACCAAAAGGTCAA 356 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TGGTGGCACCGTGGCTGATGATTCTGCTAAAGATTGGCTCGAACTTGACCAAAAGGTCAA 375 Query 357 TACATACCCAACAGAAAGAGGGTTTACTGCAATTGGGACTGGTGGCAATGACTTTGTGCA 416 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 376 TACATACCCAACAGAAAGAGGGTTTACTGCAATTGGGACTGGTGGCGATGACTTTGTGCA 435 Query 417 TGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGGACTGTGTAAA 476 ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 436 TGCTATGGTTGTTGCAGTTGAATCCGTTATTGAACGACATATTCCAGAGGATTGTGTAAA 495 Query 477 GCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATATTGGCCCTATCCAAGTCGT 536 |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 496 GCAGACGTTATCAAGCAAAGGAAAATATGTGTCGGTGAACATTGGCCCTATCCGAGTTAT 555 Query 537 CTCTAGTGAGCAGGTTCAAGCTGTGTATAATGCAATGAGGAGAGACGAAAGAATGAAATA 596 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 CTCTAGCGAACAGGTTCAAGCTGTGTATAATGCAATGAGGAGAGACGAAAGAATGAAATA 615 Query 597 CTTCTTGT 604 |||||||| Sbjct 616 CTTCTTGT 623 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28210958580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5