BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27385.4
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472942 jgi|Araly1|472942|fgenesh2_kg.1__2896__AT1G27385.1 935 0.0
> Ahg472942 jgi|Araly1|472942|fgenesh2_kg.1__2896__AT1G27385.1
Length=777
Score = 935 bits (506), Expect = 0.0
Identities = 575/608 (95%), Gaps = 5/608 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTGCAAAACGATTTTGCGTTCCGTTTTCGTATCGGAATCACGACGGACTTCCGGC 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 17 ATGGCTTGCAAAACGATTTTGCGTTCCGTTTTCGTATCGGAATCACGTCGAACTTCCAGC 76
Query 61 GCACGTAGATGCTTCTTTCTCCCTCCTTCTCCAGCATCAGTTCCAGTCCATGGTTTGTTC 120
||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 77 GCAAGTAGATGCTTCTTTCTCCCTCCTTCTCCAGTATCAGTTCCGGTCCATGGTTTGTTC 136
Query 121 CCGGCGCCAAAGAGTCTATGTTTCAATGGTTTTGCATCTGTTCCCGAGCGGGCT-ACTCG 179
||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||
Sbjct 137 CCGGCGCCAAAGAGTCTCTGTTTCAGTGGTTTTGCATCTGTTCCCGAGCGGG-TCACTCG 195
Query 180 GCTTAATTGCAGCCATAACGATCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAA 239
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 196 GCTTAATTGCAGCCATAACGATCAATCTGATCAAGGCCCGCCCCAAGAAGCTGTTCTCAA 255
Query 240 GGCAATCTC---AGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTAT 296
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 256 GGCAATTTCAGAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAATATGATTAT 315
Query 297 TGGAGGCACTGTGGCTGATGATTCTGCTAAAGATTGGCTCGAACTTGACCAAAAGGTCAA 356
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TGGTGGCACCGTGGCTGATGATTCTGCTAAAGATTGGCTCGAACTTGACCAAAAGGTCAA 375
Query 357 TACATACCCAACAGAAAGAGGGTTTACTGCAATTGGGACTGGTGGCAATGACTTTGTGCA 416
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 376 TACATACCCAACAGAAAGAGGGTTTACTGCAATTGGGACTGGTGGCGATGACTTTGTGCA 435
Query 417 TGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGGACTGTGTAAA 476
||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 436 TGCTATGGTTGTTGCAGTTGAATCCGTTATTGAACGACATATTCCAGAGGATTGTGTAAA 495
Query 477 GCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATATTGGCCCTATCCAAGTCGT 536
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 496 GCAGACGTTATCAAGCAAAGGAAAATATGTGTCGGTGAACATTGGCCCTATCCGAGTTAT 555
Query 537 CTCTAGTGAGCAGGTTCAAGCTGTGTATAATGCAATGAGGAGAGACGAAAGAATGAAATA 596
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CTCTAGCGAACAGGTTCAAGCTGTGTATAATGCAATGAGGAGAGACGAAAGAATGAAATA 615
Query 597 CTTCTTGT 604
||||||||
Sbjct 616 CTTCTTGT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5