BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27390.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921775 jgi|Araly1|921775|scaffold_103056.1 680 0.0
> Ahg921775 jgi|Araly1|921775|scaffold_103056.1
Length=658
Score = 680 bits (368), Expect = 0.0
Identities = 580/679 (85%), Gaps = 27/679 (4%)
Strand=Plus/Plus
Query 70 TCTTTCACCTGAATCTGAAGATGGAGTTCTCTACCGCCGACTTTGAAAGGCTTATCATGT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCTTTCACCTGAATCTGAAGATGGAGTTCTCTACCGCCGACTTTGAAAGGCTTCTCATGT 60
Query 130 TCGAACATGCTCGCAAAAATTCTGAGGCTCAGTACAAGAACGATCCTCTTGATTCCGAGA 189
| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TTGACCATGCTCGCAAAGCTTCTGAGGCTCAGTACCTTAACGATCCTCTTGATTCCGAGA 120
Query 190 ATCTGCTGAAATGGGGTGGAGCTTTACTTGAACTTTCACAGTTCCAGC-CTATTCCTGAA 248
||||| | |||||||| ||||| || ||||||||||| || |||||| | ||||||||
Sbjct 121 ATCTGGTTAAATGGGGCGGAGCATTGCTTGAACTTTCTCAATTCCAGAAC-ATTCCTGAT 179
Query 249 GCTAAGCTCATGTTAAATGATGCTATTTCCAAGTTGGAAGAGGCCTTGACAATAAATCCA 308
|| ||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 180 GCAAAGGTGATGTTAAATGATGCTATTTCCAAGTTGGAAGAGGCGTTGACATTAAATCCA 239
Query 309 GGGAAGCATCAGGCTCTTTGGTGTATTGCCAACGCGTACACCGCCCACGCGTTT-TATGT 367
|||||||||||||||||||||||| ||| ||||| ||||| |||| || ||| | |||
Sbjct 240 GGGAAGCATCAGGCTCTTTGGTGTCTTGGGAACGCCTACACTTCCCATGCATTTCT-TGT 298
Query 368 TC-ACGATCCTGAAGAAGCAAAAGAGCACTTTGATAAAGCCACTGAATATTTCCAGAGAG 426
|| | ||| ||| ||||||| || |||||||||||||||| ||||||||||||| ||||
Sbjct 299 TCCA-GATGTTGATGAAGCAAGAGGGCACTTTGATAAAGCCGCTGAATATTTCCAAAGAG 357
Query 427 CAGAAAATGAGGATCCAGGTAATGACACATATCGCAAGTCCTTGGAT-TCCTCA-CTAAA 484
| ||||||||||||||||| ||||| ||||| |||||||||||| || || | |||
Sbjct 358 CTGAAAATGAGGATCCAGGCAATGAGGTATATCTCAAGTCCTTGGAGGTCA-CAAC-AAA 415
Query 485 GGCCCCGGAACTGCATATGCAGTTT-ATGAATCAAGGAATGGGACAGCAAATACTaggtg 543
|||||| |||||||||||| || | || || || |||||||||||||||||||||||||
Sbjct 416 GGCCCCAGAACTGCATATGGAGATACAT-AAGCATGGAATGGGACAGCAAATACTAGGTG 474
Query 544 gaggaggaggaggaggtggaggaggaATGGCTTCATCTAATGTTAGCCAGAGTAGTAAGA 603
||||||||| | | ||||| | ||||||||| || | ||||||
Sbjct 475 TAGGAGGAGGTCCT--TCC-G---------CTTCAGCGAATGTTAGC-AGTG--GTAAGA 519
Query 604 AGAAGAAGAGGAACACTGAATTCACTTATGATGTATGCGGTTGGATAATTCTCGCTTGTG 663
|||||| || ||||| ||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 520 AGAAGAGGAAGAACAATGACTTCACTTATGATGTATGTGGTTGGATAATTCTTGCGTGTG 579
Query 664 GGATTGTTGCTTGGGTTGGCATGGCAAAATCCCTTGGCCCTCCACCTCCTGCCAGATAAA 723
| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 580 GTATTGTTGCTTGGATTGGCATGGCAAAATCCCTTGGCCCTCCACCTCCTGCTAGATGAA 639
Query 724 GCCTAAAGCCATAGTAGTG 742
|||||||||||||||||||
Sbjct 640 GCCTAAAGCCATAGTAGTG 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5