BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27400.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472943 jgi|Araly1|472943|fgenesh2_kg.1__2897__AT1G27400.1 1022 0.0
> Ahg472943 jgi|Araly1|472943|fgenesh2_kg.1__2897__AT1G27400.1
Length=672
Score = 1022 bits (553), Expect = 0.0
Identities = 633/670 (94%), Gaps = 12/670 (2%)
Strand=Plus/Plus
Query 101 GAAGTACTCTCAAGAGCCCGATAATAT-CACCAAATCTTGCAAGGCGAGAGGAGCCGATC 159
|||||||||||| |||||||| ||| | |||||||||||||||||| |||||||||||||
Sbjct 6 GAAGTACTCTCAGGAGCCCGACAAT-TCCACCAAATCTTGCAAGGCAAGAGGAGCCGATC 64
Query 160 TCAGGGTCCACTTCAAGAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGA 219
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 65 TCAGGGTCCACTTCAAGAACACTAGGGAAACAGCGCACGCCATAAGGAAGCTACCATTGA 124
Query 220 ACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACCC 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 ACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACCC 184
Query 280 GTTTCTGTCGTGGTGTTGGTCGTACCGCTCAGGCAAAGAACAGGCATTCGAACGGACAAG 339
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct 185 GTTTCTGTCGTGGTGTTGGTCGTACTGCTCAGGCAAAGAACAGGCATTCTAACGGTCAGG 244
Query 340 GTCGCTGGCCTGCTAAATCTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCA 399
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 245 GTCGTTGGCCTGCTAAATCTGCTCAGTTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCA 304
Query 400 ATGCTGAGGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACC 459
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 305 ATGCTGAGGTCAAAGGTTTGGATGTTGATGCCCTTTTCATTTCTCACATCCAAGTGAACC 364
Query 460 AAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCCTTACATGT 519
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 365 AAGCAGCAAAACAGAGGAGAAGGACTTATCGGGCTCATGGAAGAATCAATCCTTACATGT 424
Query 520 CAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGC 579
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 425 CAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGC 484
Query 580 CGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCTATAACATAGA 639
|||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||
Sbjct 485 CGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCGTCTTGAGCTA-AT-ATAGA 542
Query 640 CAGTCTATTTGT-G--CTCACTTGTGTTACCCT-T-AATACTTTTTGTTAGCTTCTCT-- 692
|||||| ||||| | |||||||||||| ||| | ||||| ||||||||||||||||
Sbjct 543 CAGTCTTTTTGTTGTGCTCACTTGTGTTGCCCCCTCAATACATTTTGTTAGCTTCTCTTT 602
Query 693 C-TATAAGACCAATACTCAATTTTTAAGTATGATGATTATCGGTTTTTGGATTGCTGAAA 751
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 603 CCTATAAGACCAAGACCCAATTTTTAAGTATGATGATTATCGGTTTTTGGATTGCTGGAA 662
Query 752 GAATCTCTCT 761
||| ||||||
Sbjct 663 GAACCTCTCT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5