BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27410.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472944 jgi|Araly1|472944|fgenesh2_kg.1__2898__AT1G27410.1 2464 0.0
> Ahg472944 jgi|Araly1|472944|fgenesh2_kg.1__2898__AT1G27410.1
Length=1572
Score = 2464 bits (1334), Expect = 0.0
Identities = 1494/1573 (95%), Gaps = 3/1573 (0%)
Strand=Plus/Plus
Query 6 CAATTTTCAAGGAATCCGAAATGGAGAGTGGTCTGATATCAGTGGATCGATGGAGAAATG 65
||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CAAATTTCAAAGAATCAGAAATGGAGAGTGGTCTGATATCAGTGGATCGATGGAGAAAGG 60
Query 66 GAAGTCAAGCCTACTTCTTGACTCATATACACTCCGATCACACTCGTGGCCTCTCCGGCG 125
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 61 GAAGTCAAGCCTACTTCTTGACTCATATGCACTCCGATCACACGCGTGGACTCTCCGGCG 120
Query 126 GATGGTCCCAAGGTCCTCTCTACTGTTCCCGCACCACCGCCTCTCTATTTCCCTCCCGTT 185
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 121 GATGGTCCAAAGGTCCTCTCTACTGTTCCCGCATCACCGCCTCTCTATTTCCCTCCCGAT 180
Query 186 TCCCAGGTTTCGACCTCTCCTTGCTTCGCGTCGtccctctcttttcctggacatctctct 245
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 TCCCAGGCTTCGACCTCTCCTTGCTTCGCGTCGTCCCTCTCTATTCCTGGACATCTCTCT 240
Query 246 ccctccgctctccttcctccggctccacagtccgcctccATCTCATGGCCATCGATGCTC 305
|||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 241 CCCTCCATTCTCCTTCCTCCGGCTCCACCGTCCGCCTCCATTTCATGGCCATCGATGCTC 300
Query 306 ACCACTGTCCTGGATCCATAATGTTTTTGTTCCGGGGAGATTTCGGATGTTTTCTCTACA 365
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 ACCACTGTCCTGGCTCCATGATGTTTTTGTTCCGGGGTGATTTCGGATGTTTTCTCTACA 360
Query 366 CTGGAGACTTCCGGTGGGATTCTGATGCATCAGACGAAGCTAGAACCACTCTCGTTGCTG 425
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| | ||
Sbjct 361 CTGGAGACTTCCGGTGGGATGCTGATGCATCAGACGAAGCCAGAACCATTCTCGTCGATG 420
Query 426 CTATTGACGAGTTTCCAGTCGACATTCTCTATCTGGATAACACTTACTGCAATCCAATTT 485
||||| |||| ||||| ||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 421 CTATTCACGAATTTCCCGTCGACATTCTTTATTTGGATAACACTTATTGCAATCCAATTT 480
Query 486 ACAGTTTTCCTTCCCGTCTAGTCGCTGTTCAATTGGTTGCTGATATAATTGCTTCTCATC 545
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 ACAGTTTTCCTTCCCGTCAAGTCGCTGCTCAATTGGTTGCTGATATAATTGCTTCTCATC 540
Query 546 CTTCACATGATATCATCATAGCAGTTGACTCTTTGGGAAAAGAAGACCTCCTTGTTCATG 605
||||||||||||||||||||||||||||||||||||| || ||||| || ||| ||||||
Sbjct 541 CTTCACATGATATCATCATAGCAGTTGACTCTTTGGGGAAGGAAGAACTACTTCTTCATG 600
Query 606 TTTCCCGCATTCTCAATATCAAGATTTGGGTTTGGCCAGAACGTCTTCGTACCATGCATC 665
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 601 TTTCCCGCATTCTCAATATCAAGATTTGGGTTTGGCCAGAGCGTCTTCGTACTATGCATC 660
Query 666 TCCTTGGTTTCCAAGACATTTTCACTACTGATACATCTCTTACAAGAGTGCGGGCTGTCC 725
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCTTGGTTTCCAAGACGTTTTCACTACTGATACATCTCTTACAAGAGTGCGGGCTGTCC 720
Query 726 CTCGTTATAGTTTTAGTATTCAGACTCTCGAGGGGCTGAATACGATGTGCCCAACTATCG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCGTTATAGTTTTAGTATTCAGACTCTCGAGGGGCTGAATACGATGTGCCCAACTATCG 780
Query 786 GTATCATGCCTTCAGGTCTCCCATGGGTGAAAAGACCTTTCAAAGGAGATGACAAGCTCT 845
| || ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 GCATTATGCCGTCTGGTCTCCCATGGGTGAAAACACCTTTCAAAGGAGATGACAAGCTCT 840
Query 846 CTGGTTCTTTTCTTACTGCAAGTATGAAGAATGAAACCGTTTCTGCGAAGAAAGAATTAG 905
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 841 CTGGTTCTTTTCTTACTGCAAGTATGAAGAATGAAACCATTTCTGCTCAGAAAGAATTAG 900
Query 906 AAGCAGCTGCAGTGCATAAGTTCCATGACTATATGTACTCGGTGCACTACTCTGATCATT 965
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGCTGCTGCAGTGCATAAGTTCCATGACTATATGTACTCGGTGCACTACTCTGATCATT 960
Query 966 CATGTTATGAGGAGATTGGAGAGTTTATAAAACTTGTGAAACCAAAGAGCATGAAAGGAA 1025
|||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 961 CATGCTATGAGGAGATTGGAGAGTTCATTAAACTTGTGAAGCCAAAGAGCATGAAAGGAA 1020
Query 1026 TTGTGGTGTCATCATCATCGTATGTTGACCCTCTTTACTACTTTGGGCGTATCTGTGGAG 1085
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 TTGTGGTGTCATCATCATCGTATGTTGACCCTCTTTACTACTTTGGCCGTATCTGTGGAG 1080
Query 1086 CCAACCAACCGCCACAAGTGCTGCTTATGAGGCCTGACATCGCAGAGGAATTTCGAGCTG 1145
||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 1081 CCAACCAACCGCCACAAGTTCTGCTAATGAGGCCTGACATCGCAGATGAATTTCAAGCTG 1140
Query 1146 TTAGGATTAAGTCATATTCTGCAAGTGACAAGACTAGAATGTTGGCAAAAGAAAAAAGGT 1205
||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 1141 TTAGGATCAAGTCATATTCTGCAACTGACAAGACTAGAGTGTTGGAAAAAGAAAAAAGGT 1200
Query 1206 GGAAGCGAGATAGTCATTCAAGTTTGAAGAGAAACAAGAAGAGAGCACGTATCCAAGTAA 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 GGAAGCGAGATAGTCATTCAAGTTTGAAGAGAAACAAGAAGAGAGCACGTATACAAGTAA 1260
Query 1266 AGTGCGCAAAGATTTTAGAGGTTGATTAGCTCTACTTGCCTCTGGGTGGTGTCTCACGTT 1325
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1261 AGTGCGCAAAAATTTTAGAGGTTGATTAGCTCTACTTGCCTCTGGGTGGTGTCTCACAAT 1320
Query 1326 GATGTGGCGGCTTCTTTTTCCTCAAGGTTACAATGGTGTCTATGTGAATGGTCTAATACA 1385
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1321 GATGTGGCGGCTTCTTTTTCCTCAAGGTTACAATGTTGTCTATGTGAATGGTCTAATACA 1380
Query 1386 CAATCCTTTTCTATGGG-AGGAGTAAGTAAAATTTAAGATAATATATGAATTATTCAGTT 1444
|||||||||||| |||| | ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1381 CAATCCTTTTCTCTGGGGAAGAGTAAGTAAAATTTAAGAAAATATATGAATTAATCAGTT 1440
Query 1445 GAATAGAAAGTCACTATCTTTT-AAAAAGTAAGCAGTTGTTTGTTTATGCTTAGTTAACA 1503
|||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 1441 GAATAGAAAGTCTCTATCTTTTTAAAAAGTAAGCAGTTGTTTGTATATGCTTAGTTGACA 1500
Query 1504 AAGTCTTGATTTTTAAATTCGAAAACACTTGGTCAATGTTTTTGTCTTTTGTATGTTATC 1563
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AAATCCTGATTTT-AAATTCGAAAACACTTGGTCAATGTTTTTGTCTTTTGTATGTTATC 1559
Query 1564 CAAATGATTACTC 1576
|||||||||||||
Sbjct 1560 CAAATGATTACTC 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5