BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27420.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921778 jgi|Araly1|921778|scaffold_103059.1 1670 0.0
> Ahg921778 jgi|Araly1|921778|scaffold_103059.1
Length=1082
Score = 1670 bits (904), Expect = 0.0
Identities = 996/1041 (96%), Gaps = 4/1041 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGTGGAGTCGTCGTCGTCTCCGATCATACCTGGCTTGACGGATGACGTGGCAGAG 60
|||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 22 ATGGTGGTCGAGGAGTCGTTGTATCCGATCATACCTGGCTTGACGGATGACGTGGCGGAG 81
Query 61 CTCTGTGTCTCGAAAATCCCGAGGTCTAGCTTTCAGATCACTTCTCAGGTGTGCCGGCGA 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 82 CTCTGTGTCTCGAAAATCCCGCGGTCTAGCTTTCAGATCACTTCTCAGGTGTGCCGTCGA 141
Query 121 TGGAGGTCATTCCTCAGGAGCCAGCATTTTGCAGCTGTTCGAAAGTTGACCGGAACGGTG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 142 TGGAGGTCATTCCTCAGGAGCCAGCATTTTGCAGCCGTTCGAAAGTTGACCGGAACGGTG 201
Query 181 GAGGAGTTCCTGTGTGTTCTAATGGAAAGCGAGTGTGGAAGAGACGTGTACTGGGAAGTT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 202 GAGGAGTTCCTGTGTGTTCTGATGGAAAGCGAGTGTGGAAGAGACGTGTACTGGGAAGTT 261
Query 241 TTTGACGCCTCCGGGAACAAGTTAGGCCAGATCCCTCCTGTCCCTGGGCCCTTGAAGCGC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TTCGACGCCTCCGGGAACAAGTTAGGCCAGATCCCTCCTGTCCCTGGGCCCTTGAAGCGC 321
Query 301 GGTTTCGGCGTTGCAGTGCTTGATGGCGGGAAGATTGTGTTCTTCGGAGGATATACGGAG 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 322 GGTTTCGGCGTTGCAGTGCTTGATGGCGGGAAGATTGTGTTCTTTGGAGGATATACGGAG 381
Query 361 GTGGAAGGCTCTGGCATCAATAGCACCACTGTCTCTGCCTCTGCTGATGTTTACGAGTTT 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GTTGAAGGCTCTGGGATCAATAGCACCACTGTCTCTGCCTCTGCTGATGTTTACGAGTTT 441
Query 421 GATCCTGCTAATAACAGCTGGAGAAAACTTGCGGGAATGAACATACCACGTTACAACTTT 480
||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 442 GATCCTGCTTCTAACAGCTGGAGAAAACTAGCGGCCATGAACATACCACGTTACAACTTT 501
Query 481 GCATTTGCTGAAGTGAACGGTCTTTTGTATGTGATTAGAGGCTATTCCACAGATACTTAT 540
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 502 GCATTTACTGAAGTGAACGGTCTTTTGTATGTGATTCGAGGCTATTCCACAGATACTTAT 561
Query 541 AGCCTTTCCAACGCGGAAGTATACAACCCGAAAACTAACCA-ATGGAGTCTTATGCATTG 599
|||||||||||||||||||| ||||||||| | ||||| || ||||||||||||| ||||
Sbjct 562 AGCCTTTCCAACGCGGAAGTGTACAACCCGCATACTAA-CAGATGGAGTCTTATGGATTG 620
Query 600 TCCAAATCGCCCTGTTTGGCGCGGCTTTGCATTCGCATTCAGTTCCAAACTCTACGCTGT 659
|||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 621 TCCAAACCGCCCTGTTTGGCGCGGCTTTGCATTCGCCTTCAATTACAAACTCTACGCTGT 680
Query 660 AGGCAATGGTTCGAGGTTCATCGACATATATGACCCGAAAACGCAGACATGGGAAGAGTT 719
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 681 AGGCAATGGATCGAGGTTCATCGATATATATGACCCGAAAACGCAGACATGGGAAGCGTT 740
Query 720 AAACTCGGAGCAATCAGTGTCGGTGTATTCCTACACAGTTGTGAGGAACAAAGTGTATTT 779
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 741 AAACTCGGAGCAATCAGTGTCGGTGTATTCCTACACGGTTGTGAGGAATAAAGTGTTTTT 800
Query 780 CATGGACAGGAACATGCCGGGACGTCTGGGAGTATTTGATCCAGAGGAGAATTCGTGGAG 839
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 801 TATGGACAGGAACATGCCGGGACGTCTGGGAGTGTTTGATCCAGAGGAGAATTCGTGGAG 860
Query 840 TTCAGTGTTTGTGCCTCCGAGAGAAGGG-GGTTTCTGGGTGAGACTAGGAGTATGGAACA 898
||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 861 TTCGGTGTTTGTGCCTCCGAG-GGAGGGAGGTTTCTGGGTGAGACTAGGAGTATGGAACA 919
Query 899 ATAAGGTTCTACTGTTTTCACGGGTTTGTGGACATGAGACCTTAATGTACGACCTTGATA 958
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 920 ATAAGGTTCTACTGTTTTCACGTGTTTGTGGACATGAGACCTTAATGTACGACCTTGATA 979
Query 959 AAGAGAAAGGTTCCAAATGGAGAGTGTGTGATCAGATTAAACCATCTGCTTCTCAATTGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AAGAGAAAGGTTCCAAATGGAGAGTGTGTGATCAGATTAAACCATCTGCTTCTCAATTGG 1039
Query 1019 CCAGCGTTCTCATCAACTTCT 1039
|||||||||| ||||||||||
Sbjct 1040 CCAGCGTTCTTATCAACTTCT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5