BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27435.1
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921780 jgi|Araly1|921780|scaffold_103061.1 449 1e-125
> Ahg921780 jgi|Araly1|921780|scaffold_103061.1
Length=291
Score = 449 bits (243), Expect = 1e-125
Identities = 273/288 (95%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 42 GAGAGAGAACGAGAGAGGCGGCCATGGGAGGAGGAATGGGTGCGTTTTGGGGAACTCGAG 101
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAGAAAGAAAGAGAGAGGCGGCCATGGGAGGAGGAATGGGTGCGTTTTGGGGAACTCGAG 62
Query 102 TGATGGAATTAGTGAAGAAGCACGATTCCGGTGGTCTTCTTTGGAAGCGGATCAAGCTAA 161
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 63 TGATGGAATTGGTGAAGAAGCACGATTCCGGTGGTCTTCTTTGGAAGCGGATCAAGCTTA 122
Query 162 CCCCTACTCGTAAAGCCAATGCCAAAACCCGCCTCCGTCGTGTTTGGCAGAATGAGGCTG 221
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 123 CACCTACTCGTAAAGCCAATGCCAAAACCCGCCTCCGTCGCGTTTGGCAGAATGAGGCTG 182
Query 222 TTCTAAGGGCGTGTGGTGAATCAGATGCACCAAATCCGCCGGGAGCTAGCAACACAAAAA 281
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 183 TTCTAAGGGCGTGTGGTGAATCAGATGCACCAAATTCTCCGGGAGCTAGCAACACAAAAA 242
Query 282 GCTCTAGCAATGCGGTGAAAAATGCGTAAGGCCGAAGAGAAGCTAGTC 329
|| ||||| |||||||||||||| ||||| | |||||| ||||||||
Sbjct 243 TCTGTAGCAGTGCGGTGAAAAATGAGTAAGACGGAAGAGGAGCTAGTC 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25427985639
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5