BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27450.3
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472949 jgi|Araly1|472949|fgenesh2_kg.1__2903__AT1G27450.1 667 0.0
> Ahg472949 jgi|Araly1|472949|fgenesh2_kg.1__2903__AT1G27450.1
Length=1032
Score = 667 bits (361), Expect = 0.0
Identities = 411/435 (94%), Gaps = 3/435 (1%)
Strand=Plus/Plus
Query 793 GGAAGGTTATTTCGGAGGAGTATTCGTTGGAGTATGGAACAGATACGATTGAGATGCACG 852
|||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 556 GGAAAGTTATTTCAGAGGAGTATTCGTTGGAGTATGGAACAGATACGATGGAAATGCATG 615
Query 853 TAGGTGCAGTAGAGCCTGGTGAGCGTGCTATTATTATTGATGACCTCATTGCCACGGGTG 912
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 616 TAGGTGCAGTAGAGCCTGGTGAGCGTGCTATTATTATTGATGACCTCATTGCAACGGGTG 675
Query 913 GGACTCTCGCTGCTGCAATCCGACTACTTGAACGAGTAGGAGTGAAGATTGTTGAATGTG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 676 GGACTCTCGCTGCTGCAATCCGACTACTTGAACGAGTAGGAGTGAAGATTGTTGAGTGTG 735
Query 973 CTTGCGTAATTGAGTTACCAGAGCTTAAGGGAAAGGAGAAACTAGGAGAGACGTCGCTAT 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 736 CTTGCGTAATTGAGTTACCAGAGCTTAAGGGAAAGGAGAAACTAGGAGAGACACCGCTAT 795
Query 1033 TTGTTCTTGTAAAG-TCGGCTGCTTAACAAGAAACTGGAAGAGAAGGTTATTGGATCGAG 1091
|||||||||||| | |||||||||||||||||||| | ||| || |||||||||||| ||
Sbjct 796 TTGTTCTTGTAA-GCTCGGCTGCTTAACAAGAAACCGAAAGGGAGGGTTATTGGATCAAG 854
Query 1092 TGTTGATGCTATTTTTCATGTATGGTGAGACATTTTGCGTGGGA-TTTGATCCTTGTTGT 1150
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 855 TGTTGATGCTATTTTTCATGTATGGTGAGACATTTTGCTTGGGGGTTTGATACTTGTTGT 914
Query 1151 TTCAACTTATCATAATTGGTTCAGACTAGAAAATGGCATTTGAATGTCAGGATTCGATTG 1210
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 915 TTCAACTTATAATAATTGGCTCAGACTAGAAAATGGCATTTGAATGTCAGGATTCAATTG 974
Query 1211 CAGTTTCCTATTGTT 1225
|||||||| ||||||
Sbjct 975 CAGTTTCCGATTGTT 989
Score = 525 bits (284), Expect = 3e-148
Identities = 300/308 (97%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 411 GCAGCCAGTCGGGACAGTGAAATGGCGACTGAAGATGTGCAAGATCCCAGAATCGCTAAG 470
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 249 GCAGCGAGTCGGGACAGTGAAATGGCGACTGAAGATGTGCAAGATCCGAGAATCGCCAAG 308
Query 471 ATTGCCTCTTCCATTAGAGTCATCCCCGACTTCCCTAAACCAGGAATCATGTTTCAGGAC 530
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 ATCGCCTCTTCCATTAGAGTCATCCCCGACTTCCCGAAACCAGGAATCATGTTTCAGGAC 368
Query 531 ATAACGACGCTTCTTCTCGACACTGAGGCCTTTAAGGATACTATTGCTTTGTTTGTTGAT 590
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ATAACGACGCTTCTTCTAGACACTGAGGCCTTTAAGGATACTATTGCTTTGTTTGTTGAT 428
Query 591 AGATACAAAGATAAAGGCATATCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTCATTTTT 650
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGGTACAAAGATAAAGGCATATCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTCATTTTT 488
Query 651 GGCCCTCCTATTGCGTTGGCTATTGGTGCCAAATTTGTTCCCATGAGGAAGCCCAAGAAG 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 489 GGCCCTCCTATTGCGTTGGCTATTGGTGCCAAATTTGTTCCCATGAGGAAGCCCAATAAG 548
Query 711 CTACCTGG 718
||||||||
Sbjct 549 CTACCTGG 556
Score = 379 bits (205), Expect = 2e-104
Identities = 238/253 (94%), Gaps = 5/253 (2%)
Strand=Plus/Plus
Query 112 AGACTTGAAAAGTCATTGATCACGGCTTTTGTCCATTATTCCGTGTTTAAAGTAATTTAC 171
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1 AGACTTGAAAAGTCATTGATCACGGCATTTGTCCATTATTCCGTTTTTAAAGTAATTTAC 60
Query 172 ATTCTCTTTTAAGATCTCTCAGTCCAAAGACAATGCAAACAATAATAATTTCTCCACTTG 231
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 61 ATTCTCTTTTAAGATCTCTCAGTCCAAAGACGATGCAAACAATAAT--TT-CTCCACTTG 117
Query 232 TTTCTCATCGTCTCTGTCTTGCTCGTGCTGTTCCTTGCAACCGTCTTCTCAACAACCACC 291
|||||||||||||||||||||||| |||||||||| || ||||||||| ||||||| |||
Sbjct 118 TTTCTCATCGTCTCTGTCTTGCTCCTGCTGTTCCTCGCTACCGTCTTCCCAACAACTACC 177
Query 292 ACCGTGCTCCTCCTTCGATCCGCCTCTCAAACCACCGTTCAACCACCTCACTCC-GCCTC 350
|||||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||
Sbjct 178 ACCGTGCTCCTCCTTCGATCCGTCTCTCAAACCACCGTTCCACCACCTCAC-CCTGCCTC 236
Query 351 TTCTCCTCCGCCG 363
|||||||||||||
Sbjct 237 TTCTCCTCCGCCG 249
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1243 TTAATAAGGTGTTATGGGTTTTATTTATAGAATCAAGTTGTAAT 1286
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct 989 TTAATAAGATGTTATGGGTTTTATTTATAGAATCAAGTTGTAAT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5