BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27461.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313471 jgi|Araly1|313471|fgenesh1_pm.C_scaffold_1002251 1587 0.0
> Ahg313471 jgi|Araly1|313471|fgenesh1_pm.C_scaffold_1002251
Length=3147
Score = 1587 bits (859), Expect = 0.0
Identities = 961/1012 (95%), Gaps = 0/1012 (0%)
Strand=Plus/Plus
Query 82 ACCCATTGCACCAAAGCCCGGGACGCCTCGAGTGAACGACGATGATCCTTCTTCCTCTAT 141
||||||||| || |||||||||||||||||||| || |||||||| || |||||||||||
Sbjct 2136 ACCCATTGCTCCTAAGCCCGGGACGCCTCGAGTTAATGACGATGACCCCTCTTCCTCTAT 2195
Query 142 GTCTCACAAAATCAGCCAATCTCCTTACCTTCGTAACCTCTGGCCTCAGCTTCAAGCGCG 201
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 GTCTCACAAGATCAGCCAATCTCCTTACCTTCGTAACCTCTGGCCTCAGCTTCAAGCGCG 2255
Query 202 ACCTACAAGAACCCGCAAGCGAGGCCGAGGCGGGATGGGTCCCTCTTCTCTTGCTATGAA 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GCCTACAAGAACCCGCAAGCGAGGCCGAGGCGGGATGGGTCCCTCTTCTCTTGCTATGAA 2315
Query 262 GAGACCAAAGTCGTCATGCGGTTCTTCTAGTACTTCTACTATTTCTACACAACGTGTTCT 321
|||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2316 GAGACCAAAGTCGTTATGCGGTTCTTCTCCCACTTCTACTAATTCTACACAACGTGTTCT 2375
Query 322 TGGACCTATTAAAACACTGTCGTTTCAGGCTTTCACTCATCATAGGTTACCTAACCTACC 381
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 2376 TGGACCTATTAAAACACTGCCGTTTCAGGCTTTCACTCATCATGGGTTACCTAACCTAGC 2435
Query 382 TCAAGTTGGCTACGGTTTTGAGAATGGTGTCTCTTCTACTTTGGTGACTTTGCCTCTTCT 441
|||||||||||||| ||| || ||||||| ||||||| ||||||||||||| ||||||||
Sbjct 2436 TCAAGTTGGCTACGCTTTGGACAATGGTGGCTCTTCTGCTTTGGTGACTTTACCTCTTCT 2495
Query 442 CCAATGCTCTCCTCCTTCCTCCAAATGCATGGAGCCAGAGATCAAAGGAAAAGGTGTCAT 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 TCAATGCTCTCCTCCTTCCTCCAAATGCATGGAGCCAGAGATCAAAGGAAAAGGTGTCAT 2555
Query 502 TGATCTGAACAAGACCGCGGAAGTGATACAGGAGAGAGACTTCTTGACGCAACTACAAGG 561
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2556 TGATCTCAACAAGACCGCGGAAGTGATACAAGAGAGAGATTTCTTGACGCAACTACAAGG 2615
Query 562 ACCCATCACCACAACCACAACCGCAACCACAAGCAGAGTCATATCACCGCAGCCCATAAG 621
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2616 ACCCATCACCACACCCACAACCGCAACCACAAGCAGAGTCATATCACCGCAGGCCATAAG 2675
Query 622 GCCGGTTTGCTCAAAGATCAACGTAGCCTACATAAACCCACTAACCAACCCATCTCCAAC 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2676 ACCGGTTTGCTCAAAGATCAACGTAGCCTACATAAACCCACTAACCAACCCATCTCCACC 2735
Query 682 GTCTCAAACCAGCAAGAAATCACCAAGAGAGGTCGAAGAGGATGTTGAATCCGATGACTT 741
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2736 ATCTCAAACCAGCAAGAAATCACCAAGAGAGGTCGAAGAGGAAGTCGAATCCGATGACTT 2795
Query 742 GCCCTCAGTGATCACCGATTCAAACAGCAGGGTCAGACTCGTGAACTCCGCTTACAAGGA 801
|||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 2796 GCCCTCTGTGATCACCGATTCCAACAACAGGGTCAGGCTCGTGAACTCCGCTTACAAGGA 2855
Query 802 AATGATGGGGCAGCCAGAGTGCTCATGGCTGGATTCAATGGTGAGAGGGAAGAGGATCTG 861
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2856 AATGATGGGTCAGCCCGAGTGCTCGTGGCTGGATTCAATGGTGAGAGGGAAGAGGATCTG 2915
Query 862 TGGAGAAGTGATGATCAATTTTTGTGAATCCAAAATTCCAGTGATGACTGAGAACAATGG 921
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2916 TGGGGAAGTGATTATCCATTTTTGTGAATCCAAAATTCCAGTGATGACTGAGAATAATGG 2975
Query 922 GTTTTCTTGCTGGGTAAGGATAGATTGGGGAAGAGACGGTAAGGAGGAGTACATGCATGC 981
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2976 GTTTTCTTGCTGGGTGAGGATAGATTGGGGAAGAGTCGGTAAGGAGGAGTACATGCATGC 3035
Query 982 CTTTTGCGATGTTACGAAACTTGCTTGCGATTCCAAGGATTATGTCTTTACGTGGAGGTT 1041
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3036 CTTTTGCGATGTTACGAAACTTGCTTGCGATTCCAAAGATTATGTCTTTACGTGGAGGTT 3095
Query 1042 TCACACAACCACTGACCGCAGATAGACTTGCCAGTCAAGCTGCAACGTTTAG 1093
|||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct 3096 TCACACAACCACTGACCGCAGAGATACTTGTCATTCAAGCTGCAACGTTTAG 3147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5