BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27490.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921787 jgi|Araly1|921787|scaffold_103068.1                        204    6e-52


> Ahg921787 jgi|Araly1|921787|scaffold_103068.1
Length=586

 Score =  204 bits (110),  Expect = 6e-52
 Identities = 184/219 (84%), Gaps = 8/219 (4%)
 Strand=Plus/Plus

Query  281  GTTTCTTGGCCGACGAACAGAATAAAGTTGTAGTGTGT-TGCAAGTGGCGCTCGGATTC-  338
            |||||||||||||| ||||| | ||||||||||||| | ||| || ||  || | | || 
Sbjct  352  GTTTCTTGGCCGACAAACAGCACAAAGTTGTAGTGT-TCTGCGAGAGGTACT-GTAATCT  409

Query  339  CATCAATACCATTTACTTCGTGGGAGAAAATAAACACGTACAAGTGGATCAACGTCGTGG  398
            || ||||||||||||||| ||||||||||||||||||||||||||||||   | | ||||
Sbjct  410  CAACAATACCATTTACTTTGTGGGAGAAAATAAACACGTACAAGTGGATTGTCATGGTGG  469

Query  399  AGATCTTA-CACTCGGACAATCTTGCTCGTTTCTTATGAATTATGTTCCAAGTTTCG-TA  456
            |||| | | ||||| ||  ||||| |||  ||||||||||||||||||||||||| | | 
Sbjct  470  AGAT-TCAACACTCAGATTATCTTACTCACTTCTTATGAATTATGTTCCAAGTTTGGCT-  527

Query  457  CAAATCCAACAAGGTACACTTCTTGCACCACGCACATGA  495
            ||||| |||||||||||| ||||| ||||||||||||||
Sbjct  528  CAAATTCAACAAGGTACAGTTCTTCCACCACGCACATGA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5