BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27510.1
Length=2230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912571 jgi|Araly1|912571|Al_scaffold_0001_2825 2931 0.0
> Ahg912571 jgi|Araly1|912571|Al_scaffold_0001_2825
Length=1944
Score = 2931 bits (1587), Expect = 0.0
Identities = 1845/1966 (94%), Gaps = 32/1966 (2%)
Strand=Plus/Plus
Query 75 ATGGCGACAACTCAACCATGTCTTATCGGCCAAATAATCGCTGTTCCTCAATTTCACATC 134
|||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 1 ATGGCGACAACTCATCCATGTCTTATCGGCCAAAGAATCTCTGTTCCTCAATTTCACCTC 60
Query 135 CTCTTCAGCCCCAGAAATTCTCTAAAGCCGGAGCTCTCGACCAACAAACGCACAAATTTC 194
||||||||||||| |||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct 61 CTCTTCAGCCCCAAAAATTCTCCAAATCCGGAGCTCTCCACCAACAAACGCACCAATTTC 120
Query 195 TCCGTATCTATCGGTCTACGACATTCCTTCGCTTCTTCTATATCAACCTGTAACCCTAAA 254
|||||||||||||| |||||||||||||||| |||||||| ||||||| |||||| ||
Sbjct 121 TCCGTATCTATCGGCCTACGACATTCCTTCG---CTTCTATAACAACCTGGAACCCT-AA 176
Query 255 G-CCCCATCTTTAAGCTGTCTGCGAAATTGCGCCGCTGTTGATGGAGCTGATACTAGTTC 313
| || ||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 177 GAAACCGTCTTTAAGCTGTCTGCGAAATTGCGCCGCCGTTGATGGCGCAGATACCAGTTC 236
Query 314 GAGTGAGGATAAGTGGGATTGGGATTGGGATCGTTGGAACCGTCACTTCTCCGAGATTGA 373
| |||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 237 GTGTGAGGATAA----G--TGGGATTGGGATCGTTGGAACCGCCACTTCTCCGAGATTGA 290
Query 374 AGAAGTCGAGAGCGTTGTTTCTCTTCTCAAGTCTCAACTTGAGGATGCTGTTGAAAAAGA 433
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 291 AGAAGTCGAGACCGTTGTTTCTCTTCTCAAGTCTCAACTTGAAGATGCTGTTGAAAAAGA 350
Query 434 AGACTTTGAAGAAGCAGTCAAGTTGAAACAAGCTATTTCAGAAGCTACTGTTGATGATGC 493
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 351 AGACTTTGAAGAAGCAGTAAAGTTGAAACAAGCTATTGCAGAAGCTACTGTTGATGATGC 410
Query 494 TGTCGCTGAGATCATGCGCCAGTTACAGACTGCAGTAAACGAAGAGCGTTACCATGATGC 553
||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 411 TGTTGCTGAGATCATGCGCCAGTTACAGACTGCAATAAGCGAAGAGCGTTACCATGATGC 470
Query 554 TTCCAGGTTATGTAACGAGACAGGAAGTGGACTGGTGGGTTGGTGGGTTGGTTTA-CCTC 612
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 471 TTCCAGGTTATGTAACGAGACAGGAAGTGGACTGGTGGGTTGGTGGGTTGG-TTATCCTC 529
Query 613 GAGATTCTGAGGAACCATTTGGCAGAATTGTACACATAACTCCAGGTGTTGGTAGGTTTA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GAGATTCTGAGGAACCATTTGGCAGAATTGTACACATAACTCCAGGTGTTGGTAGGTTTA 589
Query 673 TTGGCAAGAGTTACAGTCCAAGACAGCTGGTGGCTGAAGCAGCTGGAACACCCCTGTTTG 732
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 TTGGCAAGAGTTACAGTCCAAGACAGCTGGTGGCTGAAGCAGCTGGAACACCTCTGTTTG 649
Query 733 AGATTTTCGTTATTAAAGACACTGACGGAGGATATGTTATGCAGGTGGTGTATGTGCAAC 792
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 650 AGATTTTCGTTGTTAAAGACACTGACGGAGGATATGTTATGCAGGTGGTGTATTTGCAAC 709
Query 793 ACGTGAAGCAAAACCTAACCATTTCCGAGAATTCCT-TTTCAAAAGTACAGCAATCCTCG 851
|||||||||||||||| |||||||||||||||||| ||| || || ||||||||| ||
Sbjct 710 ACGTGAAGCAAAACCTGTCCATTTCCGAGAATTCCTATTT-AAGAGCACAGCAATCATC- 767
Query 852 AAAT-CCTCGATCAATGACCCATCCATTTTAGATGTACGAGGAAGTGAACTGAAGGT-GG 909
|||| |||| ||| |||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 768 AAATACCTCAATCGATGACCCATCCATTCTAGATGTACGAGGAAGTGAACTGAAG-TCGG 826
Query 910 ATAAAAAAGAAGATACACAACTAAATGCTGGGGAACCAACTGAAGAAGGAATTAAAAATG 969
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 827 ATAAAAAAGAAGATATACAACTAAATTCTGGGGAACCAACTGAAGAAGGAATAAAAAATG 886
Query 970 TGATAAAATTTCTAAAAGATAAAATCCCAGGGCTAAAACTGAAAGTAATGGATGTTATTA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TGATAAAATTTCTAAAAGATAAAATCCCAGGGCTAAAACTGAAAGTAATGGATGTTATTA 946
Query 1030 AAATCCCTGAGGAAGAGATTGTTGGCAGTGATGAC-GCTACTGAAGAGCTGGTTGGAGAA 1088
||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||
Sbjct 947 AAATCCCTGAGGAAGAGATCGTAGGCAGTGATG-CTGCTACTGAAGAGCTGGTTGGAGAA 1005
Query 1089 GGCACTGAGGAAACAAATTCTTCTGATGATgaagaagaagtagaagaagaagaaAATGAC 1148
|||| |||||||||||||||||| |||||||||||||||| | | |||||| || ||||
Sbjct 1006 GGCATTGAGGAAACAAATTCTTCCGATGATGAAGAAGAAG-A-A-GAAGAA-AA--TGAC 1059
Query 1149 AGTATTGAAGCAATCTCATCTATGGATAGTGCAGATTATGGAAAGCATTCAAACACTAAG 1208
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1060 AGTATTGAAGAAATCTCATCTATGGATAGTGCAGATTATGGAAAGCATTTAAACACTAAG 1119
Query 1209 CTTGTCATCGGAGGGGTTCTACATAACATAGAGGATTCCTCTATAGATGATGAGATTGTC 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1120 CTTGTCATCGGAGGGGTTCTACATAACATAGAGGATTCCTCTATAGATGATGAGATTGAC 1179
Query 1269 CGTGTGTCGGCAAATATAATGGATACTGAAAGAGATTCCTTTATATTGCATGTTCCTGGG 1328
||||| |||||| ||||||||||| ||||||| ||||||||||| ||||| |||||||||
Sbjct 1180 CGTGTCTCGGCAGATATAATGGATGCTGAAAGGGATTCCTTTATCTTGCACGTTCCTGGG 1239
Query 1329 AGAAGTAAGAGGGATATCGATACAAGGAAAAATAGAGTGTCCAAAGAACAAGTAACAGCT 1388
|||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1240 AGAAGTAAGATTGATATCGATACAAGGAAAAACGGAGTGTCCAAGGAACAAGTAACAGCT 1299
Query 1389 CTTGCAGCTCAAGGACTTTCAGATCTGTTGCCACCAGAGGTTGCCGAGGCGTTCTGGGG- 1447
||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1300 CTTGCAGCTCAAGGAATTTCAGATTTGATGCCACCAGAGGTTGCCAAGGCGTTCTGGGGT 1359
Query 1448 --AGAGAAAGCTTCTTTGAAGGTATCGA-AACATGTGCATGAGATTGTCAAGCTTGCTAT 1504
||| |||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 1360 TCAGAAAAAGCTTCTTTGAAGGTATCGAGAA-ATGTGCGTGAGATTGTCAAGCTTGCTAT 1418
Query 1505 AAACCAGGCACAAAAAGGAAACCATCTCTCCGAGTATACAGCATTTAATAGAATCATAAC 1564
||| ||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1419 AAATCAGGCGCAAAAAGGAAACCGTCTCTCGGAGTATACATCATTTAATAGAATCATAAC 1478
Query 1565 TCCTGAAAGCAACTTAGACCCTTTTGATGGTCTATATGTGGGTGCATTCGGGCCTTATGG 1624
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1479 TCCTGAAAGCAACCTAGACCCTTTTGATGGCCTATATGTGGGTGCATTCGGGCCTTATGG 1538
Query 1625 CACCGAGATAGTGCAACTTAAGCGTAAGTATGGTCGGTGGGATGATGCAGAAGGAAGTAA 1684
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1539 CACTGAGATAGTGCAACTTAAGCGTAAGTATGGTCGGTGGAATGATGCAGAAGGAAGTAA 1598
Query 1685 CTCCTCAGATATAGAGTTCTTTGAATATGTTGAGGCTGTAAAGTTGACAGGGGATCCAAA 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 CTCCTCAGATATAGAGTTCTTTGAATATGTTGAGGCTGTAAAGTTGACAGGGGATCCAAA 1658
Query 1745 TGTGCCGGCTGGCCAGGTGACATTCCGTGCAAGGATTGGGAATGGGAGTCGCATGACGAA 1804
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1659 TGTGCCGGCTGGCGAGGTGACCTTCCGTGCAAGGATCGGGAATGGGAGTCGCATGACGAA 1718
Query 1805 TCATGGATTGTTTCCAGAGGAATTGGGAGTGCTTGCGAGTTACAGAGGGCAAGGAAAAAT 1864
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1719 TCATGGTTTGTTTCCAGAGGAATTGGGAGTGCTTGCGAGTTACAGAGGACAAGGAAGAAT 1778
Query 1865 CGCTGACTTTGGGTTTAAAAAGCCAAGATGGGTCGAGGGCAAGCTCTTAAAACTCAATGG 1924
||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||
Sbjct 1779 CGCAGACTTTGGGTTTAAAAACCCAAAATGGGTCGAGGGCAAGCTTTTAAAACTCAACGG 1838
Query 1925 AAAGGGAATGGGACCATATGTGAAGGGCGCAGATCTTGGATTTCTATATATTGGCCCTGA 1984
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1839 AAAGGGAATGGGACCATATGTGAAGGGTGCGGATCTTGGATTTCTATATATTGGCCCTGA 1898
Query 1985 GCAGAGTTTCTTGGTCCTTTTCAACCGTCTGAGACTGCCTGAGTGA 2030
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1899 GCAGAGTTTCTTGGTCGTTTTCAACCGTCTGAGACTGCCTGAGTGA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83950899980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5