BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27520.1
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472957 jgi|Araly1|472957|fgenesh2_kg.1__2911__AT1G27520.1 3278 0.0
> Ahg472957 jgi|Araly1|472957|fgenesh2_kg.1__2911__AT1G27520.1
Length=2036
Score = 3278 bits (1775), Expect = 0.0
Identities = 1966/2056 (96%), Gaps = 21/2056 (1%)
Strand=Plus/Plus
Query 1 TTGTTCTAATCGAGAGATCAGACGCGGCGGAGACTGGCGGAGATGATGAATTCATAAATT 60
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1 TTGTTCTAATCGAGAGATCAGACGCGGCGGAGAGTGGAAGAGATGATCAATTCATAAATT 60
Query 61 CCTTCTTCTCCTTTCCTCTCTTTTCATTTGATTGGCTTCTTACACAGCTTCGTCATCATG 120
||||||||||| | ||||||||||| ||||||| ||| | | ||||||||
Sbjct 61 CCTTCTTCTCC-TAATTCTCTTTTCATGTGATTGG---CTT------C-T--TCATCATG 107
Query 121 TCTTGTCCTATCCATCCTAGGCGTCTCTTCCTCTGCTTGCTTATTTCTCTCACTTTCTTC 180
||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 108 TCTTGTCCTCTCCATCCAAAGCGTCTCTTCCTCTGCTTGCTTATTTCTCTCGCTTTCTTC 167
Query 181 GTCGTCGACCCTTCATCGCAGCATATCGAGGTCAAGAAGAAACAAATGCGAGAGAAAGTA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 168 GTCGTCGACCCTTCATCGCAGCATCTCGAGGTCAAGAAGAAACAAATGCGAGAGAAAGTA 227
Query 241 CGCGAGATGTTCTATCATGCGTATGACAATTACATGACTTATGCATTTCCGCATGATGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CGCGAGATGTTCTATCATGCGTATGACAATTACATGACTTATGCATTTCCGCATGATGAG 287
Query 301 CTAAAGCCTCTAACTAAAAGTTTCACAGACTCCCTCAGTGAGCTTGGAAATCTTAAGCTT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CTAAAGCCTCTAACAAAAAGTTTCACAGACTCCCTCAGTGAGCTTGGAAATCTTAAGCTT 347
Query 361 GAACACCTGCCAACAGATTATAATGGATCAGCTGTTACTCTTGTTGAATCATTATCCAGC 420
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 348 GAACACCTGCCAACAGATTATAATGGATCAGCTGTTACACTTGTTGAATCCTTATCCAGC 407
Query 421 CTTGCTATATTGGGGAACAGTACAGAATTTGAAAAGGGGGTTCTCTGGCTCTCAGAAAAT 480
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 408 CTTGCTATATTGGGAAACAGTACAGAATTTGAAAAGGGGATTCTCTGGCTCTCAGAAAAT 467
Query 481 CTTACTTTCGATATTGATGCCCGGGTCAACCTTTTTGAGTGCAATATAAGAGTTCTTGGA 540
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CTAACATTCGATATTGATGCCCGGGTCAACCTTTTTGAGTGCAATATAAGAGTTCTTGGA 527
Query 541 GGACTTATCTCTGCTCATCTTCTTGCAATTGATCCAAATAATAGGTTGATTCAGGGTTCC 600
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 528 GGACTTATCTCTGCTCATCTTCTTGCAATTGATCCAACTAATAGGTTAATTCAGGGTTCC 587
Query 601 TACAACAATCAGCTTCTTCGATTAGCTGAAGACCTTGGAAAACGTTTTTTACCCGCGTTT 660
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 588 TACAACAATCAGCTTCTTCGATTAGCTGAAGACCTTGGAAAACGCTTTTTGCCAGCGTTT 647
Query 661 GAAACACCTACAGGATTACCATATGCATGGATTAATTTGAAGAATGGAGTAATGGAGAAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GAAACACCTACAGGATTACCATATGCATGGATTAATTTGAAGAATGGAGTAATGGAGAAT 707
Query 721 GAGACAACTGAAACAAGCACTTCAGGATGTGGTTCTCTCGTTCTTGAAATGGGAGCATTG 780
||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 708 GAGACAACTGAAACAAGTACTTCAGGATGTGGTTCTCTCATTCTTGAAATGGGATCATTG 767
Query 781 TCACGGCTCACTGGTGACCCGAGGTTTGAATCAGCTGCACTACGTGCGCTTCGTCAGCTA 840
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 768 TCACGGCTCACTGGTGACCCTAGATTTGAATCAGCTGCACTACGTGCGCTTCGTCAGCTA 827
Query 841 TGGAGGATGCGAAGTTCGTTAGATCTGCTTGGGACAACATTGGATGTGGTAACTGGGGAA 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 828 TGGAGGATGCGAAGTTCGTTAGATCTGCTTGGGACGACATTGGATGTGGTAACTGGGGAA 887
Query 901 TGGATAGAGTACTCCTCTAGCATTGGAGCTGGGGTTGACTCTTTCTATGAATACCTCTTG 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGGATAGAGTACTCCTCCAGCATTGGAGCTGGGGTTGACTCTTTCTATGAATACCTCTTG 947
Query 961 AAGGCTTATATTCTTTTTGGAAAAGAAGACTACTGGCGAATGTTTCATTCTGCTTATCTG 1020
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 948 AAGGCTTATATTCTTTTTGGAAAAGAAGACTACTGGCGAATGTTTCGTTCTGCTTATATG 1007
Query 1021 GCATCTCAGAAGTACTTCAGACATGGGCCTTGGTACCATGAAGCTAATATGTGGAGTGGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GCATCTCAGAAGTACTTCAGACATGGGCCTTGGTACCATGAAGCTAATATGTGGAGTGGA 1067
Query 1081 AAACCAACTTACTGGCAGCTCACAAGTCTTCAGGCGTTTTGGCCTGGTCTGCAGGTTCTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AAACCAACTTACTGGCAGCTCACAAGTCTTCAGGCGTTTTGGCCTGGTCTGCAGGTTCTT 1127
Query 1141 GTTGGAGATATTGCAGCTGCAAATTCATCGCATCGTGAGTTTTTCCATGTATGGGAAAAG 1200
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1128 GTTGGAGATATCGCAGCTGCAAATTCATCGCACCGCGAGTTTTTCCATGTATGGGAAAAG 1187
Query 1201 TTTGGTGTATTACCTGAGAGGTATCTACTCGATCATCAAATAATACATCCGACAATGAAG 1260
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1188 TTTGGTGTATTACCTGAGAGGTATCTACTGGATCATCAAATCATACATCCGACAATGAAG 1247
Query 1261 TACTATCCACTACGTCCTGAATTAGCAGAATCCACGTTCTACCTTTACCAAGCTACAAAA 1320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1248 TACTATCCACTACGTCCTGAATTAGCAGAATCCACGTTCTACCTATACCAAGCTACAAAA 1307
Query 1321 GATCCATGGTATCTAGATGTTGGTGAATCAATGGTAAAATCTCTTAATCTCTACACAAAG 1380
||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 1308 GATCCATGGTATCTAGATGTTGGTGAAACAATTGTAAAATCTCTTAATCTGTACACAAAG 1367
Query 1381 GTGCCAGGGGGATTTGCAAGTGTTAGAGATGTGACGACCATGCAATTGGAAGATCATCAG 1440
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1368 GTGCCAGGGGGATTTGCAAGTGTTAGAGATGTGACGACCATGCAACTGGAAGATCATCAG 1427
Query 1441 CACAGTTTCTTTCTCGCTGAAACGTGCAAGTACCTATATCTCCTCTTCGATGACTCATTT 1500
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1428 CACAGTTTCTTTCTCGCTGAAACGTGCAAGTACTTATATCTCCTCTTCGATGATTCATTT 1487
Query 1501 GTGGCCAAAAGGAATTATATATTTACAACCGAGGGCCATCCTATACAGGTTGTGAGCTCC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GTGGCCAAAAGGAATTATATATTTACAACCGAGGGCCATCCTATACAGGTTGTGAGCTCC 1547
Query 1561 TGGCATGAGAAACTACCAGAAACTTATTTCTCAGGCAACTGGACCCTTTCAAAGAGTGGA 1620
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1548 TGGCATGAGAAACTACCAGAAAATTATTTCTCAGGCAACTGGACCCTTTCAAAGAGTGGA 1607
Query 1621 GCATGGGAAAGTCGAGCTAGCGCATTGTCACTACAAGTCTGTCCA-CTGATATCTCTTAA 1679
||||||||||| |||| |||||||||||||| |||||||||||| | |||| |||||||
Sbjct 1608 TCATGGGAAAGTAGAGCAAGCGCATTGTCACTGCAAGTCTGTCCATC-GATAGCTCTTAA 1666
Query 1680 CTCTAGACATCCTGAGCAACAAAGAGAGAGTGCTTGCCATGTTCTTGACGAGCAAATCAA 1739
|||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1667 CTCTAGACGTCCTGAGCAACACAGAGAGAGTGCTTGCCATGTTCCTGACGTGCAAATCAA 1726
Query 1740 TCATAAGTGTTGGAGCAACAAAGAGTGCGGAGTTGATGCCACTACTTGTAGACTAAGAAC 1799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1727 TCATAAGTGTTGGAGCAACAAAGAGTGTGGAGTTGATGCCACTACTTGTAGACTAAGAAC 1786
Query 1800 CTGCAGCGGGGTTGGATACTGCGGCTTATGGAATCCCTTATAACTTTTGACACAAAACAG 1859
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1787 CTGCAGCGGGGTTGGATACTGCGGCTTATGGAATCCCTTATAACTTTGGACACAAAACAG 1846
Query 1860 TGGGGTCTTGGGTTTTAATAAAGGAAAGAGAAGAGGTGGAGTTTACGAACTGAAACTGTA 1919
|||||| |||||||| | ||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 1847 TGGGGTTTTGGGTTTCAGTAAAGGAAAGAGAAGAGGTGGGGTTTATGAACTGATACTGTA 1906
Query 1920 AATTAATGCGAAATGACAAGTTTTGGTAGACAGAAAATGGATAGTTGTTGCATGAGGCTG 1979
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1907 AATTAATGTGAAATGACAAGTTTTGGTTGACAGAAAATGGATAGTTGTTGCATGAGGCTG 1966
Query 1980 TTGTATCTTTTTCTTTGATTCATCAGTCCTGACATGGATATATAGTTATATACTATGGGA 2039
|||||||||||||||||| ||||||||| |||| |||||||||| | || || | ||||
Sbjct 1967 TTGTATCTTTTTCTTTGAGTCATCAGTCTTGACTTGGATATATA-T-AT-TA-T--GGGA 2020
Query 2040 GGATCAACCTCGATCA 2055
||||||||||||||||
Sbjct 2021 GGATCAACCTCGATCA 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80218055970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5