BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27530.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472958 jgi|Araly1|472958|fgenesh2_kg.1__2912__AT1G27530.1 1247 0.0
> Ahg472958 jgi|Araly1|472958|fgenesh2_kg.1__2912__AT1G27530.1
Length=747
Score = 1247 bits (675), Expect = 0.0
Identities = 723/747 (97%), Gaps = 0/747 (0%)
Strand=Plus/Plus
Query 1 AATCAGAATCAAGCATCCGATTCCGATCGACAAATAGGGTTTAGAATCCACACACCCAAA 60
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1 AATCAGAATCAAGCATCCGATTCCGATCGACAAATAGGGTTTTGAATTCACACGCCCAAA 60
Query 61 TCGGAAGGCGAAGAAAATGGAAGGATGGGATCCGAACACGAAGTCGACGTTAACGCGAAT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGTAGGCGAAGAAAATGGAAGGATGGGATCCGAACACGAAGTCGACGTTAACGCGAAT 120
Query 121 ACCGCTTCTGACGACAAAGGCGGGTCCAAGAGACGGCGCGGCATGGACGCAGAGGCTGAA 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 ACCGCTTCTGACGACAAAGGCGGGTCCAAGAGACGGCGCGGCGTGGACGCAGAGGCTGAA 180
Query 181 AGAGGAGTACAAGTCTCTGATTGCGTATACCCAAATGAACAAGTCCAACGACAATGACTG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 AGAAGAGTACAAGTCTCTGATTGCGTATACCCAAATGAACAAGTCCAACGATAATGACTG 240
Query 241 GTTCCGTATCTCCGCTTCCAATCCTGAGGGCACGCGTTGGACTGGCAAGTGTTGGTATGT 300
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 241 GTTCCGTATCTCTGCTTCCAATCCTGAAGGAACGCGTTGGACTGGCAAGTGTTGGTATGT 300
Query 301 TCACAACCTTCTCAAATACGAATTCGATCTCCAGTTCGATATCCCGATTACCTATCCAGC 360
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 301 TCACAATCTTCTCAAATACGAATTCGATCTCCAGTTCGATATCCCTATCACCTACCCAGC 360
Query 361 CACTGCTCCTGAGCTTGAGCTGCCTGAGATTGACGGCAAGACTCAAAAGATGTATCGAGG 420
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 361 CACTGCTCCTGAGCTTGAGCTGCCTGAGATTGATGGCAAGACCCAGAAGATGTATCGAGG 420
Query 421 TGGGAAGATATGTTTGACTGTGCATTTCAAGCCTCTATGGGCCAAAAACTGTCCTCGGTT 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TGGGAAGATATGTTTGACTGTGCATTTCAAGCCTCTCTGGGCCAAAAACTGTCCTCGGTT 480
Query 481 TGGTATAGCACATGCACTTTGTTTGGGGCTCGCTCCGTGGTTAGCTGCAGAGATTCCAAT 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 TGGTATAGCACATGCACTTTGTTTGGGGCTCGCTCCGTGGCTAGCTGCAGAGATTCCAAT 540
Query 541 TCTTGTGGACTCCGGCGCGATTAAGCACAAAGATGACGCAGCCACATCTGCGGAATCTTA 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTGTGGACTCCGGCGCTATTAAGCACAAAGATGACGCAGCCACATCTGCGGAATCTTA 600
Query 601 AATCTATGTAACCTTTCTATCAATCTCAGAAATGTTGAGGTGTTTATCAGTAATAGCTGA 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCTATGTAACCTTTATATCAATCTCAGAAATGTTGAGGTGTTTATCAGTAATAGCTGA 660
Query 661 ACTCAGAAATGACTGAGGTGGATGCGTCTACCCTATAAATACACTTACATGAAACCCAAT 720
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 661 ACTCAGAAATGACTGAGGTGGCTGCGTCTACCCTATAAAAACACTTACATGAAACCCAAT 720
Query 721 AAAGATTTAAGCTATTGCAATGTTTTT 747
||||||||||||||||| |||||||||
Sbjct 721 AAAGATTTAAGCTATTGTAATGTTTTT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5