BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27540.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313478 jgi|Araly1|313478|fgenesh1_pm.C_scaffold_1002258 1059 0.0
Ahg921796 jgi|Araly1|921796|scaffold_103077.1 1027 0.0
Ahg950619 jgi|Araly1|950619|scaffold_802506.1 75.0 2e-12
> Ahg313478 jgi|Araly1|313478|fgenesh1_pm.C_scaffold_1002258
Length=1305
Score = 1059 bits (573), Expect = 0.0
Identities = 983/1171 (84%), Gaps = 68/1171 (6%)
Strand=Plus/Plus
Query 154 AGATCTACGCTCAAACGAACATCGAGTATTCCTGATTTTGAGCCTGTTAA-GTCTCTGCG 212
||||||||||||||||||||||||||| |||| ||| |||||||| ||| | || ||||
Sbjct 178 AGATCTACGCTCAAACGAACATCGAGTTTTCCGGATCCTGAGCCTGCTAAGGCCT-TGCG 236
Query 213 TTCGACTTTGATTC-TGCAGCCAAAAGCCGGATCTCCATTGCTGATGCTGATTGCAGAAG 271
||||||||||| || ||| ||||||| |||||| |||||||||||||| ||| ||||||
Sbjct 237 TTCGACTTTGA-TCATGCGGCCAAAATTCGGATCACCATTGCTGATGCTAATTACAGAAG 295
Query 272 AGTATGGTTGTCGTATTTACAACCCAGAAGATGGTAGGGTTTACGAGCCGAAGAGTGACT 331
|| ||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct 296 AGGATGGTTGTCGTATCTACAACCCAGAAGATGGTATGGTCTACGAGACGAAGAGTGACT 355
Query 332 TTTCAGGGTATCGATTCCTGGGAAGCTCAGGTAAGTGGTTTCTGGTGGTAGATTCTCGAA 391
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 356 TTTCAGGGTATCGATTCCTGGGAAGCTCCGGTAAGTGGTTTCTGGTGGTAGATTCTC-AA 414
Query 392 -TGAAACTCTATATTATAGATGTATTTAGCGAGAAGAGGATCGATCTTCCACCACTAGAA 450
|||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 415 TTGAAACTCTATATTGTAGATGTCTTTAGGGAGGAGAGGATCGATCTTCCACCACTAGAA 474
Query 451 TCATTTAAGGGTAGCCATTT-TAAGATTTG-GCGTGAAGGAGAGGAGAATGTCAAGCATA 508
||||| || ||||||| ||| ||||||| | ||| | ||||||| | || |||| | |||
Sbjct 475 TCATTGAAAGGTAGCC-TTTATAAGATT-GAGCGAGTAGGAGAGAATAAAGTCAGGAATA 532
Query 509 TGGTA-ATGGATGATGAGGATCCATTTTGTGATGAATTTCCTCATGCTGCCGAAGATCTG 567
| || | | |||| ||| | || | || | |||||| ||||||||||||||
Sbjct 533 TATTATACAG-TGATTT--ATC--TCCTGGG--GA-T--CCTCATACTGCCGAAGATCTG 582
Query 568 AGAGGTCGTTTGTGGGTTGACGACAAGAATGGAA-ACTACGTTGTTGTGTGGCAGTTTGA 626
||||||||||||||||| | |||||| || |||| ||||||||||||||||||| |||||
Sbjct 583 AGAGGTCGTTTGTGGGTAGGCGACAACAA-GGAAGACTACGTTGTTGTGTGGCATTTTGA 641
Query 627 AATGTACC-CATTTCTAGGGTTTTGCAGGACAGGGGATGATCATTACCGCGAGAT-TCCA 684
|||| || | |||||||||||||||| || |||||||||||||||||||||||| | |
Sbjct 642 AATGAACGAC-TTTCTAGGGTTTTGCAAGAAAGGGGATGATCATTACCGCGAGATCTT-A 699
Query 685 ACAGAGCTC-GAG-GTTCAG-AGGGAGTTACGAGGTTTAAACGATATGGTACTGAAAGGT 741
||| || | | | |||| | ||||||||||| ||| |||| ||||||||||| ||||||
Sbjct 700 ACA-AGGACCG-GTGTTC-GCAGGGAGTTACGCGGTGTAAAAGATATGGTACTTAAAGGT 756
Query 742 TACAATCTTTACGTC-TATGCCACCCGTGAGTTCATTCGACACTTAGATTTGTCTGGACA 800
|||| ||||||||| | ||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 757 TACAGCCTTTACGTCCT-TGCCATCCGTGACTTCATTCGACACTTGGATTTGTCTGGACA 815
Query 801 AGATGAAGATGGTTTCAAGGATGTATCCGAGAAACATAGGCTTCCAATGTGGATGCCAAG 860
| |||||||||| |||||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 816 TGGTGAAGATGGTATCAAGGATGTGTCCGAGAACCATAAGCTTCCAATGTGGATGCCAAG 875
Query 861 TATGACAATGAAGGAACG-TGAAC-GT-ATGA-AGCAAAAGAGGTCTATCCCATCTAAC- 915
| ||| | | | |||| | || || | | || | |||| || | | ||||||
Sbjct 876 TCTGAGTAGGGATGAACAATTAAGAGTCAACATAG-ATAAGA--TC-AGCTCATCTAGTG 931
Query 916 AAAGGCATTGCTGTTACAAGAGCAGGTCAAGTTTTGGTTGTCT-TTACGTACGATTTAGG 974
|||| |||||||||||||||| ||||||| ||||||||||||| || | ||||| |||||
Sbjct 932 AAAG-CATTGCTGTTACAAGATCAGGTCAGGTTTTGGTTGTCTGTT-CTTACGAGTTAGG 989
Query 975 TACCTCTGAAAGT-CACAGGATGTTCCATC-TGTACAAGAGGGATCCTAAAGATCTTGAC 1032
|| ||||||| || || ||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 990 TAACTCTGAA-GTGCATAGGATGTTCCA-CGTGTACAAGAGAGATCCTAAAGATCTTGAC 1047
Query 1033 CCGAAAACC--CTCGACACCCGGCTTCTTGAGGTACATTCTCTAGGTGATGAGGCCCTCT 1090
||||| ||| || | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CCGAAGACCTACTT-A-ACCCAGCTTCTTGAGGTACATTCTCTAGGTGATGAGGCCCTCT 1105
Query 1091 T-CTATGATTTGGGTATTACCGTGCCTGCTGACCATACCCTTGGAATTGAGCCTAACTCC 1149
| || |||||||| | |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1106 TTCTC-GATTTGGGAACCACCGTGCCTGCTGACCATACCCGTGGTATTGAGCCTAACTCC 1164
Query 1150 ATTTATTTCACTCGTGATGATCGTATCTGTCACAATAAATTGT-CATGCCTCGACATCGG 1208
|| |||||||| |||| |||||||||| |||||| || | | || ||| ||||||| |
Sbjct 1165 ATCTATTTCACCCGTGGTGATCGTATCCGTCACAGGAA-TCCTTCACGCCCCGACATCTG 1223
Query 1209 TGTCTTCAATCTTGCAACAAAGACCGTCAAACGCTTCCACGGTCTCTCCAACTTCAACTT 1268
||||||||||||| ||||||||||| |||||| | | | | | | ||||| ||| |
Sbjct 1224 TGTCTTCAATCTTACAACAAAGACCATCAAACAC----A-G--C-CAC-AACTTAAACGT 1274
Query 1269 CAACGATGCTCAGTGGTTTCTTCCTTCTTGA 1299
||| ||||| | |||||||||||| ||||||
Sbjct 1275 CAAGGATGCCCGGTGGTTTCTTCCCTCTTGA 1305
Score = 86.1 bits (46), Expect = 7e-16
Identities = 83/100 (83%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 57 AATGGAGAGATCTACGCTCAAACGAACATCGAGTTTTCCAGATATTGAGGCTGTTCAGGG 116
||||||||||||||||||||||||||||||||||||||| ||| |||| ||| | |||
Sbjct 171 AATGGAGAGATCTACGCTCAAACGAACATCGAGTTTTCCGGATCCTGAGCCTGCTAAGGC 230
Query 117 GT-G--TTCGACTTTGAATT-TGCTGCCAAAAGCCGGATC 152
| | ||||||||||| | ||| ||||||| ||||||
Sbjct 231 CTTGCGTTCGACTTTGA-TCATGCGGCCAAAATTCGGATC 269
> Ahg921796 jgi|Araly1|921796|scaffold_103077.1
Length=1198
Score = 1027 bits (556), Expect = 0.0
Identities = 1002/1205 (83%), Gaps = 80/1205 (7%)
Strand=Plus/Plus
Query 158 CTACGCTCAAACGAAC-ATCGAGTAT-TCCTGATTTTGAGCCTGTTAAGTCTC-TGCGTT 214
||||||||||||| || || |||| | | | ||| ||||| ||| ||| | | ||||||
Sbjct 34 CTACGCTCAAACG-ACGATTGAGT-TGTACAGATCTTGAGTCTGCAAAGGC-CATGCGTT 90
Query 215 CGACTTTGATTCTGCAGCCAAAAGCCGGATCTCCATTGCTGATGCTGAT-TGCAGAAGAG 273
|||||||||||| | ||||| ||||||||| ||||||||||||||| | ||||||| ||
Sbjct 91 CGACTTTGATTCAGTGGCCAAGAGCCGGATCGCCATTGCTGATGCTG-TCTGCAGAAAAG 149
Query 274 TATGGTTGTC---G---TA-T-T-TACAACCCAGAAGATGGTAGGGTTTACGAGCCGAAG 324
||||||||| | || | | |||||||||| |||| ||||||| ||||| |||||
Sbjct 150 GATGGTTGTCGTAGTAATAGTGTGTACAACCCAGCCGATGATAGGGTTGACGAGACGAAG 209
Query 325 AGTGACTTTTCAGGGTATCGATTCCTGGGAAGCTCAGGTAAGTGGTTTCTGGTGGTAGAT 384
|||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 210 AGTGACCTTTCAGGGTATCGATTCCTTGGAAGCTCGGGTAAGTGGTTTCTCGTGGTAGAT 269
Query 385 TCTCGAA-TGAAACTCTATATTATAGATGTATTTAGCGAGAAG-AGGATCGATCTTCCAC 442
|||| || |||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 270 TCTC-AATTGAAACTCTATATTATAGATGTCTTTAGCGAG-GGTAGGATCGATCTTCCAC 327
Query 443 CACTAGAATCATTTAAGGGTAGCCATTT-TAAGATTTG-GCGTGAAGGAGAGGAGAATGT 500
||||||||||||| || ||||||| ||| ||| | ||| ||| | ||||||| | || ||
Sbjct 328 CACTAGAATCATTGAAAGGTAGCC-TTTATAA-AATTGAGCGAGTAGGAGAGAATAAAGT 385
Query 501 CAAGCATATGGTAATGGATGATGAG-GATCCATTTTGTGATGAATTTCCTCATGCTGCCG 559
| || | || | || || | || ||| || | || | | ||||||| ||||||
Sbjct 386 C-AGGA-AT-AT-AT-TAT--TCAGTGATTTATCTCCTG-GGGA--TCCTCATACTGCCG 435
Query 560 AAGATCTGAGAGGTCGTTTGTGGGTTGACGACAAGAATGGAA-ACTACGTTGTTGTGTGG 618
||||||||||||||||||||||||| | | |||| || |||| |||||||||||||||||
Sbjct 436 AAGATCTGAGAGGTCGTTTGTGGGTAGGCCACAACAA-GGAAGACTACGTTGTTGTGTGG 494
Query 619 CAGTTTGAAATGTACCCA-TTTCTAGGGTTTTGCAGGACAGGGGATGATCATTACCGCGA 677
|| ||||||||| | | | |||||||||||||||| || |||||||||||||||||||||
Sbjct 495 CATTTTGAAATG-AACGACTTTCTAGGGTTTTGCAAGAAAGGGGATGATCATTACCGCGA 553
Query 678 GATTC-CAAC-A-GAGCTCGAGGTTCAG-AGGGAGTTACGA-GGTTTAAACGATATGGTA 732
|| || ||| | || | ||| |||| | |||||||||| | ||| |||| |||||||||
Sbjct 554 GA-TCTTAACAAGGA-C-CGATGTTC-GCAGGGAGTTAC-ACGGTGTAAAAGATATGGTA 608
Query 733 CTGAAAGGTTACAATCTTTACGT-CTATGCCACCCGTGAGTTCATTCGACACTTAGATTT 791
|| |||||||||| ||||||| | || ||||| |||||| ||| |||||||||| |||||
Sbjct 609 CTTAAAGGTTACAGTCTTTACATCCT-TGCCATCCGTGACTTCGTTCGACACTTGGATTT 667
Query 792 GTCTGGACAAGATGAAGATGGTTTCAAGGATGTATCCGAGAAACATAGGCTTCCAATGTG 851
||||||||| | |||||||||| |||||||||| |||||||| |||| ||||||||||||
Sbjct 668 GTCTGGACATGGTGAAGATGGTATCAAGGATGTGTCCGAGAACCATAAGCTTCCAATGTG 727
Query 852 GATGCCAAGTATGACAATGAAGGAACGTGAACGTATGAAG-CAA-A-AG---AGGTCTAT 905
|||||||||| ||| ||| | |||| || ||| | || ||| | || || || |
Sbjct 728 GATGCCAAGTCTGAGTATGGATGAAC---AA-GTAAG-AGTCAACATAGATAAGATC-A- 780
Query 906 CC-CATCTA-ACAAAGGCATTGCTGTTACAAGAGCAGGTCAAGTTTTGGTTGTCT-TTAC 962
|| |||||| ||| ||||||||||||||||| |||||| ||||||||||||| || |
Sbjct 781 CCTCATCTAGTGAAA-GCATTGCTGTTACAAGATTAGGTCAGGTTTTGGTTGTCTATT-C 838
Query 963 GTACGATTTAGGTACCTCTGAAAGTCACAGGATGTTCCATCTGTACAAGAGGGATCCTAA 1022
||||| ||||||| |||| |||| | ||||||||||| ||||||||||| ||||||||
Sbjct 839 TTACGAGTTAGGTAACTCTCAAAGGGATAGGATGTTCCACCTGTACAAGAGAGATCCTAA 898
Query 1023 AGATCTTGACCCGAAAACCCT--CGACACCCGGCTTCTTGAGGTACATTCTCTAGGTGAT 1080
||||||||||||||| | ||| | | |||||||||||||||||||||||||||||||||
Sbjct 899 AGATCTTGACCCGAATA-CCTACCTA-ACCCGGCTTCTTGAGGTACATTCTCTAGGTGAT 956
Query 1081 GAGGCCCTCTT-CTATGATTTGGGTATTACCGTGCCTGCTGACCATACCCTTGGAATTGA 1139
||||||||||| || ||||||||| | |||||||||||||||||||||| ||| |||||
Sbjct 957 GAGGCCCTCTTTCT-TGATTTGGGAACCACCGTGCCTGCTGACCATACCCGTGGTATTGA 1015
Query 1140 GCCTAACTCCATTTATTTCACTCGTGATGATCGTATCTGTCACAATAAATTGT-CATGCC 1198
|||||||||||| |||||||| |||| |||||||||| |||||| || | | || |||
Sbjct 1016 GCCTAACTCCATCTATTTCACCCGTGGTGATCGTATCCGTCACAGGAA-TCCTTCACGCC 1074
Query 1199 TCGACATCGGTGTCTTCAATCTTGCAACAAAGACCGTCAAACGCTTCCACGGTCTCTCCA 1258
||||||| |||||||||||||| ||||||||||| |||||| | |||| ||||||||
Sbjct 1075 CCGACATCTGTGTCTTCAATCTTACAACAAAGACCATCAAACACCGCCACACTCTCTCCA 1134
Query 1259 ACTTCAACTTCAACGATGCTCAGTGGTTTCTTCCTTCTTGATTCTAGCCTTC-TCCATGG 1317
|||| ||| |||| |||||||||||||||||||| |||||||||| |||||| || ||||
Sbjct 1135 ACTTTAACGTCAAGGATGCTCAGTGGTTTCTTCCCTCTTGATTCTTGCCTTCCTC-ATGG 1193
Query 1318 TTTCT 1322
|||||
Sbjct 1194 TTTCT 1198
> Ahg950619 jgi|Araly1|950619|scaffold_802506.1
Length=215
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 57 AATGGAGAGATCTACGCTCAAACGAACATCGAGTTTTCCAGAT 99
||||||||||||||||||||||||||||||||||||||| |||
Sbjct 23 AATGGAGAGATCTACGCTCAAACGAACATCGAGTTTTCCGGAT 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5