BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27560.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921796 jgi|Araly1|921796|scaffold_103077.1 1085 0.0
Ahg313478 jgi|Araly1|313478|fgenesh1_pm.C_scaffold_1002258 970 0.0
> Ahg921796 jgi|Araly1|921796|scaffold_103077.1
Length=1198
Score = 1085 bits (587), Expect = 0.0
Identities = 963/1138 (85%), Gaps = 51/1138 (4%)
Strand=Plus/Plus
Query 19 CTTGAGTCTGCTAAGGCCATGCATTCGACTTTGATTCAGCGGCCAAAAACCGGATCTCCA 78
||||||||||| |||||||||| |||||||||||||||| |||||| | ||||||| |||
Sbjct 66 CTTGAGTCTGCAAAGGCCATGCGTTCGACTTTGATTCAGTGGCCAAGAGCCGGATCGCCA 125
Query 79 TTACTGATGCTGTCTTCAGAAAAGGATGGTTGTCGCT-GTAATAGTGTGTACAACCCAGA 137
|| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 126 TTGCTGATGCTGTCTGCAGAAAAGGATGGTTGTCG-TAGTAATAGTGTGTACAACCCAGC 184
Query 138 AGATGGTAGGGTTTACGAGCCGAAGAGTGACTTTTCCGGGTATCGATTCCTGGGAAGCTC 197
|||| ||||||| ||||| ||||||||||| |||| |||||||||||||| ||||||||
Sbjct 185 CGATGATAGGGTTGACGAGACGAAGAGTGACCTTTCAGGGTATCGATTCCTTGGAAGCTC 244
Query 198 AGGTAAGTGGTTTCTGGTGGTAGATTCTCGAA-TGAAACTCTATATTATAGATGTATTTA 256
|||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 245 GGGTAAGTGGTTTCTCGTGGTAGATTCTC-AATTGAAACTCTATATTATAGATGTCTTTA 303
Query 257 GCGAGAAG-AGGATCGAACTTCCACCACTAGAATCATTTAAGGGTAGCCTTTTTAAGATT 315
||||| | |||||||| |||||||||||||||||||| || |||||||||| ||| | |
Sbjct 304 GCGAG-GGTAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGCCTTTATAA-AAT 361
Query 316 TG-GCGTG-ACGGAGAGGAGAATGTCAAGCATCTACTAATGGATGGT-TTTTCATATCGT 372
|| ||| | | |||||| | || |||| | || || | || | || ||| || || |
Sbjct 362 TGAGCGAGTA-GGAGAGAATAAAGTCAGGAATATA-TTATTCA--GTGATTT-ATCTCCT 416
Query 373 CGGGGAAATCTTCATGCTGCCGAAGATCTGAGAGGTCGTTTGTGGGTTGACAACAAGGAT 432
|||| ||| |||| ||||||||||||||||||||||||||||||| | | |||| |
Sbjct 417 -GGGG--ATCCTCATACTGCCGAAGATCTGAGAGGTCGTTTGTGGGTAGGCCACAACAAG 473
Query 433 GAAAACTACGTTGCTGTCTGGCAATTTGAAATGGGCCCA-TTTCTAGGG-TTTGCAGGAC 490
||| ||||||||| ||| ||||| |||||||| | | | ||||||||| |||||| ||
Sbjct 474 GAAGACTACGTTGTTGTGTGGCATTTTGAAAT-GAACGACTTTCTAGGGTTTTGCAAGAA 532
Query 491 AGGGGATGATTATTACCGCGAGATTC-CAACACA-G-CTCGAGGTTCAG-AGGGAGTTAC 546
|||||||||| |||||||||||| || |||| | | | ||| |||| | ||||||||||
Sbjct 533 AGGGGATGATCATTACCGCGAGA-TCTTAACA-AGGAC-CGATGTTC-GCAGGGAGTTAC 588
Query 547 GA-GGTTTATACGATATGGTACTTAAAGGTTACAATCTTTACGTCTTTGCCACCCGTGAG 605
| ||| || | |||||||||||||||||||||| ||||||| || |||||| ||||||
Sbjct 589 -ACGGTGTAAAAGATATGGTACTTAAAGGTTACAGTCTTTACATCCTTGCCATCCGTGAC 647
Query 606 TTCATTCGACACTTGGATTTGTCTGGACAAGATGAAGATGGTTTCAAGGATGTGTCCGAG 665
||| ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 648 TTCGTTCGACACTTGGATTTGTCTGGACATGGTGAAGATGGTATCAAGGATGTGTCCGAG 707
Query 666 AAACATAGGCTTCCAATGTGGATGCCACGTCTGACTATGAAGGAACGTGAAAGTAG-GAA 724
|| |||| ||||||||||||||||||| |||||| |||| | |||| | ||| || ||
Sbjct 708 AACCATAAGCTTCCAATGTGGATGCCAAGTCTGAGTATGGATGAACAAGTAAG-AGTCAA 766
Query 725 CCAATTG--AAGTGT-ATCC-CATCTA-ACAAAGGCATTGCTGTTACAAGAGCAGGTCAA 779
| || | ||| | | || |||||| ||| ||||||||||||||||| ||||||
Sbjct 767 -C-ATAGATAAG-ATCA-CCTCATCTAGTGAAA-GCATTGCTGTTACAAGATTAGGTCAG 821
Query 780 GTTTTGCTTGTCTATACGTT-CGATTTAGGTACCTCTGAAAGTCATAGGATGTTCCGTTT 838
|||||| |||||||| | || ||| ||||||| |||| |||| |||||||||||| |
Sbjct 822 GTTTTGGTTGTCTATTC-TTACGAGTTAGGTAACTCTCAAAGGGATAGGATGTTCCACCT 880
Query 839 GTACAAGAGGGATCCTAAAGATCTTGACCCGAAAACCCT--CGACACCTGGCTTCTTGAG 896
||||||||| ||||||||||||||||||||||| | ||| | | ||| |||||||||||
Sbjct 881 GTACAAGAGAGATCCTAAAGATCTTGACCCGAATA-CCTACCTA-ACCCGGCTTCTTGAG 938
Query 897 GTGCATTCTCTAGGTGATGAGGCCCTCTTTCTTGATTTGGGTATTACTGTGCCTGCTGAC 956
|| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 939 GTACATTCTCTAGGTGATGAGGCCCTCTTTCTTGATTTGGGAACCACCGTGCCTGCTGAC 998
Query 957 CATACCCTTGGTATTGAGCCTAACTCCATTTATTTCACCCGTGGTGATCGTATCCGTCAC 1016
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 999 CATACCCGTGGTATTGAGCCTAACTCCATCTATTTCACCCGTGGTGATCGTATCCGTCAC 1058
Query 1017 AAAGAATCGT-CATGCCTCGACATCTGTGTCTTCAATCTTATAACAAAGACCATCAAACG 1075
| ||||| | || ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1059 AG-GAATCCTTCACGCCCCGACATCTGTGTCTTCAATCTTACAACAAAGACCATCAAACA 1117
Query 1076 CTTCCACGGTCTCTCCAACTCCAACTTCTACGATGCTCAGTGGTTTCTTCCTTCTTGA 1133
| |||| ||||||||||| ||| || | |||||||||||||||||||| ||||||
Sbjct 1118 CCGCCACACTCTCTCCAACTTTAACGTCAAGGATGCTCAGTGGTTTCTTCCCTCTTGA 1175
> Ahg313478 jgi|Araly1|313478|fgenesh1_pm.C_scaffold_1002258
Length=1305
Score = 970 bits (525), Expect = 0.0
Identities = 904/1078 (84%), Gaps = 62/1078 (6%)
Strand=Plus/Plus
Query 21 TGAGTCTGCTAAGGCCATGCATTCGACTTTGATTCA-GCGGCCAAAAACCGGATCTCCAT 79
|||| ||||||||||| ||| ||||||||||| ||| |||||||||| |||||| ||||
Sbjct 216 TGAGCCTGCTAAGGCCTTGCGTTCGACTTTGA-TCATGCGGCCAAAATTCGGATCACCAT 274
Query 80 TACTGATGCTGTCTT-CAGAAAAGGATGGTTGTCGCTGTAATAGTGTGTACAACCCAGAA 138
| |||||||| || ||||| ||||||||||| | | || | ||||||||||||
Sbjct 275 TGCTGATGCT-AATTACAGAAGAGGATGGTTGT--C-G---TA---TCTACAACCCAGAA 324
Query 139 GATGGTAGGGTTTACGAGCCGAAGAGTGACTTTTCCGGGTATCGATTCCTGGGAAGCTCA 198
||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 325 GATGGTATGGTCTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTGGGAAGCTCC 384
Query 199 GGTAAGTGGTTTCTGGTGGTAGATTCTCGAA-TGAAACTCTATATTATAGATGTATTTAG 257
|||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||
Sbjct 385 GGTAAGTGGTTTCTGGTGGTAGATTCTC-AATTGAAACTCTATATTGTAGATGTCTTTAG 443
Query 258 CGAGAAGAGGATCGAACTTCCACCACTAGAATCATTTAAGGGTAGCCTTTTTAAGATTTG 317
||| |||||||||| |||||||||||||||||||| || |||||||||| ||||| |||
Sbjct 444 GGAGGAGAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGCCTTTATAAGA-TTG 502
Query 318 -GCGTG-ACGGAGAGGAGAATGTCAAGCATCTACTAATGGATGGT-TTTTCATATCGTCG 374
||| | | |||||| | || |||| | || || | || | || ||| || || | |
Sbjct 503 AGCGAGTA-GGAGAGAATAAAGTCAGGAATATA-TTAT--ACAGTGATTT-ATCTCCT-G 556
Query 375 GGGAAATCTTCATGCTGCCGAAGATCTGAGAGGTCGTTTGTGGGTTGACAACAAGGATGA 434
||| ||| |||| ||||||||||||||||||||||||||||||| | | |||| | ||
Sbjct 557 GGG--ATCCTCATACTGCCGAAGATCTGAGAGGTCGTTTGTGGGTAGGCGACAACAAGGA 614
Query 435 AAACTACGTTGCTGTCTGGCAATTTGAAATGGGCCCA-TTTCTAGGG-TTTGCAGGACAG 492
| ||||||||| ||| ||||| |||||||| | | | ||||||||| |||||| || ||
Sbjct 615 AGACTACGTTGTTGTGTGGCATTTTGAAAT-GAACGACTTTCTAGGGTTTTGCAAGAAAG 673
Query 493 GGGATGATTATTACCGCGAGATTC-CAACACA-G-CTCGAG-GTTCAG-AGGGAGTTACG 547
|||||||| |||||||||||| || |||| | | | || | |||| | |||||||||||
Sbjct 674 GGGATGATCATTACCGCGAGA-TCTTAACA-AGGAC-CG-GTGTTC-GCAGGGAGTTACG 728
Query 548 AGGTTTATACGATATGGTACTTAAAGGTTACAATCTTTACGTCTTTGCCACCCGTGAGTT 607
||| || | |||||||||||||||||||||| ||||||||| |||||| |||||| ||
Sbjct 729 CGGTGTAAAAGATATGGTACTTAAAGGTTACAGCCTTTACGTCCTTGCCATCCGTGACTT 788
Query 608 CATTCGACACTTGGATTTGTCTGGACAAGATGAAGATGGTTTCAAGGATGTGTCCGAGAA 667
||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 789 CATTCGACACTTGGATTTGTCTGGACATGGTGAAGATGGTATCAAGGATGTGTCCGAGAA 848
Query 668 ACATAGGCTTCCAATGTGGATGCCACGTCTGACTATGAAGGAAC-GTGAAAGTAG-GAAC 725
|||| ||||||||||||||||||| |||||| || | | |||| | ||| || ||
Sbjct 849 CCATAAGCTTCCAATGTGGATGCCAAGTCTGAGTAGGGATGAACAAT-TAAG-AGTCAA- 905
Query 726 CAATTG--AAGTGT-ATCCCATCTA-ACAAAGGCATTGCTGTTACAAGAGCAGGTCAAGT 781
| || | ||| | | | |||||| ||| ||||||||||||||||| ||||||| ||
Sbjct 906 C-ATAGATAAG-ATCAGCTCATCTAGTGAAA-GCATTGCTGTTACAAGATCAGGTCAGGT 962
Query 782 TTTGCTTGTCTATACGTT-CGATTTAGGTACCTCTGAAAGT-CATAGGATGTTCCGTTTG 839
|||| |||||| | | || ||| ||||||| ||||| |||| ||||||||||||| ||
Sbjct 963 TTTGGTTGTCTGTTC-TTACGAGTTAGGTAACTCTG-AAGTGCATAGGATGTTCCACGTG 1020
Query 840 TACAAGAGGGATCCTAAAGATCTTGACCCGAAAACCCT-C-GACACCTGGCTTCTTGAGG 897
|||||||| ||||||||||||||||||||||| | ||| | | ||| |||||||||||
Sbjct 1021 TACAAGAGAGATCCTAAAGATCTTGACCCGAAGA-CCTACTTA-ACCCAGCTTCTTGAGG 1078
Query 898 TGCATTCTCTAGGTGATGAGGCCCTCTTTCTTGATTTGGGTATTACTGTGCCTGCTGACC 957
| ||||||||||||||||||||||||||||| |||||||| | || |||||||||||||
Sbjct 1079 TACATTCTCTAGGTGATGAGGCCCTCTTTCTCGATTTGGGAACCACCGTGCCTGCTGACC 1138
Query 958 ATACCCTTGGTATTGAGCCTAACTCCATTTATTTCACCCGTGGTGATCGTATCCGTCACA 1017
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 ATACCCGTGGTATTGAGCCTAACTCCATCTATTTCACCCGTGGTGATCGTATCCGTCACA 1198
Query 1018 AAGAATCGT-CATGCCTCGACATCTGTGTCTTCAATCTTATAACAAAGACCATCAAAC 1074
||||| | || ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1199 G-GAATCCTTCACGCCCCGACATCTGTGTCTTCAATCTTACAACAAAGACCATCAAAC 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5