BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27600.1
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921800 jgi|Araly1|921800|scaffold_103081.1 2095 0.0
Ahg921810 jgi|Araly1|921810|scaffold_103091.1 455 5e-127
> Ahg921800 jgi|Araly1|921800|scaffold_103081.1
Length=1229
Score = 2095 bits (1134), Expect = 0.0
Identities = 1198/1229 (97%), Gaps = 3/1229 (0%)
Strand=Plus/Plus
Query 201 CGGTGGAGTGAGATTATCTGATGGCGTCAATCCGGCGAACTCTCTCGCCGATGTATCACG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGTGGAGTGAGATTATCTGATGGCGTCAATCCGGCGAACTCTCTCGCCGATGTATCACG 60
Query 261 ATCGTTCTCACGAGAATGGAGGTTCACACAAAGGTTTCACCATTGGTGGTAGTAGCAGCA 320
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 ATCGTTCTCACGAGAATGGAGGTTCACACAAGGGTTTCACCATTGGTGGTAGTAGCAGTA 120
Query 321 AACACAATTCTTCGCAATTTCTTTCGTATCTCACCAAGCTCCTCGGAGTAACGTCTGATC 380
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 121 AACACAATTCTTCGCAATTTCTTTCGTATCTCACCAAACTCCTCGGAGTAACATCTGATC 180
Query 381 CTAAAAGCTCGCGTAGAGGTCCATGGAGGCGACCGTTTTACCAGTTTCTCGTCTTCTTTC 440
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CTAAAAGCTCGCGTAGAGGTCCATGGCGGCGACCGTTTTACCAGTTTCTCGTCTTCTTTC 240
Query 441 TTCTTGGATTTGTATTAGGTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCTTGGATTTGTATTAGGTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCG 300
Query 501 ATCGATTCTCCTTCGAGATCAAACAGCCCTACGTTGAAGAACGGTTGGA-AA-AT-AGGA 557
||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 301 ATCGATTCTCCTTCGAGATCAAACAGCCCTACGTTGAAGAACGGTTGGATAACAACAAGA 360
Query 558 AACGGGAAGAAGCAGCTGTAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGA 617
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACGGGAAGAGGTAGCTGTAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGG 420
Query 618 AGGAGGTCAATTTTGTGCCGAAGAAGCTTCTAATTGTGGTCACACCAACGTATAATAGAG 677
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 421 AGGAGGTCAATTTTGTGCCGAAGAAGCTTATAATTGTGGTCACACCAACGTATAATCGAG 480
Query 678 CGATGCAGGCGTATTACTTGAACAGGGTTGCTCAAACGCTGAGACTAGTTGAGTCGCCTG 737
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 481 CGATGCAGGCGTATTACTTGAACAGGATTGCTCAAACGCTGAGACTTGTTGAGTCGCCTG 540
Query 738 TGCTGTGGATAGTGGTGGAGGGTAACGTGGCGTCGTTTGAAACCTCAGAGATTCTGAGGA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCTGTGGATAGTGGTGGAGGGTAACGTGGCGTCGTTTGAAACCTCAGAGATTCTGAGGA 600
Query 798 AGACGGGAGTGATGTACAGGCACTTGGTTTGCAAGAGGAACATGACGAGTATCAAGGATA 857
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 AGACGGGAGTGATGTACAGGCACTTGGTTTGCAAGAGGAACATGACGAGTATTAAGGATA 660
Query 858 GAGGAGTGCATCAGAGAAACACTGCATTGGAACATATTGAGTTGCATAAGCTTGATGGAA 917
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGGAGTTCATCAGAGAAACACCGCATTGGAACATATTGAGTTGCATAAGCTTGATGGAA 720
Query 918 TTGTCTACTTTGCTGATGATGACAATATCTACTCGCTTGAGCTCTTTCAAAGCTTGAGAC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 TTGTCTACTTTGCTGATGATGACAATATCTACTCGCTTGAGCTCTTTCAAAGCTTAAGAC 780
Query 978 AAATCAGCCGATTTGGGACTTGGCCTGTTGCTATGCTCGCACAAAGCAAAAACAAGGCCA 1037
|||||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||
Sbjct 781 AAATCAGCCGATTTGGAACATGGCCTGTTGCGATGCTCGCACCAAGCAAAAACAAGGCCA 840
Query 1038 TCCTTGAAGGTCCAGTATGCAATGGAAGTCAAGTAATAGGATGGCACACTAATGAAAAGA 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCCTTGAAGGTCCAGTATGCAATGGAAGTCAAGTAATAGGATGGCACACTAATGAAAAGA 900
Query 1098 GTAAAAGACTAAGGAGGTTCCATGTTGATATGTCGGGATTTGCTTTTAACAGCACTATAC 1157
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTAAAAGACTACGGAGGTTCCATGTTGATATGTCGGGATTTGCTTTTAACAGCACTATAC 960
Query 1158 TCTGGGACCCTAAAAGGTGGCGACGTCCCTTTTCACATCCAACCCGCCAACTAGACACAG 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 TCTGGGACCCTAAAAGGTGGCGACGTCCCTTTTCACATCCAACCCGCCAACTGGACACAG 1020
Query 1218 TGAAGGAGGGTTTCCAGGAGACATCATTTATAGAGCAGGTGGTGGCTGATGAAAGCGAGA 1277
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGAAGGAGGGCTTCCAGGAGACATCATTTATAGAGCAGGTGGTGGCTGATGAAAGCGAGA 1080
Query 1278 TGGAAGGTGTTCCACCAGCTTGCTCGAGTATACTGAACTGGCATCTTCACTTGGATGCCC 1337
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1081 TGGAAGGTGTTCCACCAGCTTGCTCGAGGATACTGAACTGGCATCTTCACTTGGATGCCC 1140
Query 1338 TGGATGTCCCTTATCCACAAGGGTGGGCGATCCAAAAGAATCTGCAGGCTCTCATAACTA 1397
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1141 TGGATGTCCCTTATCCACAAGGGTGGGCGATCCAAAAGAATCTCCAAGCTCTCATAACTA 1200
Query 1398 TGAAATAGTTTGAAGATAGTTTTGACTGG 1426
|||||||||||||||||||||||||||||
Sbjct 1201 TGAAATAGTTTGAAGATAGTTTTGACTGG 1229
> Ahg921810 jgi|Araly1|921810|scaffold_103091.1
Length=374
Score = 455 bits (246), Expect = 5e-127
Identities = 274/287 (95%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 459 GTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCGATCGATTCTCCTTCGAGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCGATCGATTCTCCTTCGAGA 60
Query 519 TCAAACAGCCCTACGTTGAAGAACGGTTGGA-AA-AT-AGGAAACGGGAAGAAGCAGCTG 575
||||||||||||||||||||||||||||||| || | | |||||||||||| | |||||
Sbjct 61 TCAAACAGCCCTACGTTGAAGAACGGTTGGATAACAACAAGAAACGGGAAGAGGTAGCTG 120
Query 576 TAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGAAGGAGGTCAATTTTGTGC 635
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGGAGGAGGTCAATTTTGTGC 180
Query 636 CGAAGAAGCTTCTAATTGTGGTCACACCAACGTATAATAGAGCGATGCAGGCGTATTACT 695
||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CGAAGAAGCTTATAATTGTTGTCACACCAACGTATAATCGAGCGATGCAGGCGTATTACT 240
Query 696 TGAACAGGGTTGCTCAAACGCTGAGACTAGTTGAGTCGCCTGTGCTG 742
|||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TGAACAGGATTGCTCAAACGCTGAGACTTGTTGAGTCGCCTGTGCTG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5