BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27610.1

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921808 jgi|Araly1|921808|scaffold_103089.1                        159    9e-39
  Ahg335902 jgi|Araly1|335902|fgenesh1_pg.C_scaffold_1002467           143    9e-34


> Ahg921808 jgi|Araly1|921808|scaffold_103089.1
Length=1105

 Score =  159 bits (86),  Expect = 9e-39
 Identities = 108/119 (91%), Gaps = 0/119 (0%)
 Strand=Plus/Plus

Query  28   GCAACTATCAACCAGAAGAAGATTCCTACAAACCCTTCTCCACTAAGGATGAGAAGTGGA  87
            ||||||||||||| |||   ||| || ||||||||||||||||| |||||||||||||||
Sbjct  221  GCAACTATCAACCCGAATCTGATCCCGACAAACCCTTCTCCACTGAGGATGAGAAGTGGA  280

Query  88   TCCGCGAGGAATTCAACAAAAAAGAAGAAGATCCTAAGAAGCTCTTCGAGCTTTTCAAG  146
            ||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||
Sbjct  281  TCCGCGAGGAATTCAGCAAAGAAGAAGAAGATCCTAAGAAGCTCTTCGACCTTTACAAG  339


> Ahg335902 jgi|Araly1|335902|fgenesh1_pg.C_scaffold_1002467
Length=1245

 Score =  143 bits (77),  Expect = 9e-34
 Identities = 162/200 (81%), Gaps = 17/200 (9%)
 Strand=Plus/Plus

Query  28   GCAACTATCA-ACCAGAAGAAGATTCCTACAAACCCTTCTCCACTAAGGATGAGAAGTGG  86
            ||||||||||  || ||||| ||| || | ||||||||||||||| ||||||||||||||
Sbjct  245  GCAACTATCAGTCC-GAAGACGATCCCGATAAACCCTTCTCCACTGAGGATGAGAAGTGG  303

Query  87   ATCCGCGAGGAATTCAACAAAAAAGAAGAAGATCCTAAGAAGCTCTTCGAGCTTTTCAAG  146
            |||||||||||||||| |||| || || | |||||||||||||||||||| |||| ||||
Sbjct  304  ATCCGCGAGGAATTCAGCAAAGAA-AA-A-GATCCTAAGAAGCTCTTCGACCTTTACAAG  360

Query  147  GTATGCTTCAGAGTACCTTGGATTTGTACATCCAA-GTCGTT-TGATCAGAAGGAT-GGA  203
            |    |||| |  |||||||||||   ||| || | || | | ||||||||| ||| || 
Sbjct  361  G----CTTCGGTTTACCTTGGATTCCCACA-CCTACGT-GATCTGATCAGAACGATCGG-  413

Query  204  GACGAAGAAC-AGTATATTC  222
            || | ||||| || ||||||
Sbjct  414  GATGGAGAACGAG-ATATTC  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12247944069


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5