BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27620.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921812 jgi|Araly1|921812|scaffold_103093.1 2143 0.0
> Ahg921812 jgi|Araly1|921812|scaffold_103093.1
Length=1369
Score = 2143 bits (1160), Expect = 0.0
Identities = 1299/1367 (95%), Gaps = 5/1367 (0%)
Strand=Plus/Plus
Query 9 GAAAAATATAAACGGAGGATGCAAGAACTGCCGGATTGTTTGTACGAGGAAAACCAACCA 68
|||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 3 GAAAAAAATAAACGGAGGATGGAAGAACTGCCGGATTGCTTGTACGAGGGAAACCAACCA 62
Query 69 ACCTTAATAACTCCTTTATCTCCCACACCAAATCACTCTCTCTACCTTTCAAACCTCGAC 128
||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 63 ACCAGAATAACTCCTTCATCTCCCACACCAAATCACTCTCTCTACCTTTCCAACCTCGAC 122
Query 129 GACCATCATTTTCTCAGATTCTCTATCAAGTACCTTTACCTTTTCCAAAAATCTATATCC 188
|||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||
Sbjct 123 GACCATCATTTTCTCAGATTCTCTATCAAGTATCTTTACCTTTTCGAAAATTCTATTTCC 182
Query 189 CCTCTCACCCTGAAAGATTCGCTCTCTAGGGTTCTAGTTGATTACTACCCTTTCGCGGGT 248
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCTCTCACCCTGAAAGATTCTCTCTCTAGGGTTCTAGTTGATTACTACCCTTTCGCGGGT 242
Query 249 CGGATAAGAGTCTCCGATGAAGGGAGCAAGCTCGAGGTAGACTGTAATGGAGAAGGCGCA 308
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 CGGATAAGAGTCTCCGATGAAGGGAGCAAGCTCGAGGTAGACTGTAATGGGGAAGGCGCG 302
Query 309 GTTTTCGCAGAAGCTTTCATGGATATAACTTGTCAAGATTTTGTTCAACTTTCTCCCAAA 368
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 303 GTTTTCGCAGAAGCTTTCATGGATATAACTTGTCAAGAGTTTGTTCAGCTTTCTCCTAAA 362
Query 369 CCAAACAAGTCTTGGAGGAAGCTCTTGTTCAAGGTTCAAGCTCAGAGTTTCTTGGATATT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCAAACAAGTCTTGGAGGAAGCTCTTGTTCAAGGTTCAAGCTCAGAGTTTCTTGGATATT 422
Query 429 CCTCCTCTTGTCATACAGGTGACGTATCTCCGTTGTGGGGGTATGATCCTCTGCACCGCG 488
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 423 CCTCCTCTTATCATACAGGTGACGTATCTTCGTTGTGGGGGTATGATCCTCTGCATCGCG 482
Query 489 ATCAATCATTGCCTCTGCGACGGCATTGGCACATCGCAGTTCCTACATGCATGGGCCCAT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATCAATCATTGCCTCTGCGACGGCATTGGCACATCGCAGTTCCTACATGCATGGGCCCAT 542
Query 549 GCGACCACTAGCCAAGCTCATCTTCCGACCCGACCATTCCACTCCCGTCACGTATTAGAT 608
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 543 GCGACCACTAGCCAAGCTCATCTTCCGACCCGACCATTTCACTCCCGTCACGTGTTAGAT 602
Query 609 CCGCGAAACCCTCCACGTGTCACACACTCACATCCCGGTTTCACCCGAACCACCACCGTA 668
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 603 CCGCGAAACCCTCCCCGTGTCACACACTCACATCCCGGTTTCACCCGAACTACCACCGTA 662
Query 669 GACAAAAGCTCCACCTTCGACATTTCCAAGTATTTACAGTCCCAACCATTGGCTCCTGCC 728
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 663 GACAAAGGCTCCACCTTCGACATTTGCAAGCATTTACAGTCCCAACCATTGGCTCCCGCC 722
Query 729 ACCTTAACCTTCAACCAATCTCATCTCCTACGCTTAAAGAAAACCTGCGCTCCTTCGCTA 788
||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct 723 ACCTTAACCTTCACCCAATCTCATCTCGTACGCTTAAAGAAAACATGCGTTCCTTCGCTA 782
Query 789 AAATGCACCACGTTCGAGGCACTAGCGGCTAACACTTGGCGCTCGTGGGCTCAATCTCTA 848
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 783 AAATGCACCACGTTCGAGGCACTAGCGGCTCACACTTGGCGCTCGTGGGCTCAATCTCTT 842
Query 849 GATTTACCAATGACCATGCTGGTCAAACTCTTATTCTCAGTCAATATGAG-AAAACGACT 907
|| |||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 843 GAGTTACCATTGACCATGCTGGTCAAACTCTTATTCTCTGTCAATATGAGGAAAA-GACT 901
Query 908 AACTCCAGAACTTCCCCAAGGGTATTACGGTAATGGATTCGTACTAGCTTGCGCCGAGAG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AACTCCAGAACTTCCCCAAGGGTATTACGGTAATGGATTCGTACTAGCTTGCGCCGAGAG 961
Query 968 CAAGGTACAAGACCTAGTCAATGGTAATATTTACCACGCTGTAAAATCGATACAAGAGGC 1027
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 962 CAAGGTACAAGACCTAGTCAATGGTAATATTTACCACGCAGTAAAATCGATACAAGAGGC 1021
Query 1028 AAAATCAAGAATTACCGACGAATATGTAAGATCAACGATAGATTTACTGGAGGATAAAAC 1087
||||| ||||| || ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1022 GAAATCTAGAATCACTGACGAATATATAAGATCAACGATAGATTTACTGGAAGATAAAAC 1081
Query 1088 GGTGAAAACGGACGTCTCGTGCAGTTTGGTCATTTCACAATGGGCGAAATTGGGATTAGA 1147
|||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1082 AGTGAAAACAGACGTCTCATGCAGTTTGGTCATTTCACAATGGGCGAAACTGGGATTAGA 1141
Query 1148 GGAGTTGGACTTGGGAGGAGGAAAGCCAATGTATATGGGTCCTTTGACGAGTGATATCTA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GGAGTTGGACTTGGGAGGAGGAAAGCCAATGTATATGGGTCCTTTGACGAGTGATATCTA 1201
Query 1208 CTGTTTATTTTTACCCGTGGCGAGCGATAATGATGCCATCAGAGTTCAAATGTCCCTGCC 1267
||||||||||||||| || ||||| |||||||||||||| || |||||||| || |||||
Sbjct 1202 CTGTTTATTTTTACCTGTCGCGAGGGATAATGATGCCATTAGGGTTCAAATATCGCTGCC 1261
Query 1268 GGAGGAAGTTGTGAAGAGACTAGAGTATTGCATGGTTAAGTTTTTAGACG-GAAAAGATA 1326
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1262 AGAGGATGTTGTGAAGAGACTAGAGTATTGCATGGTTAAGTTTTTAGACGAGAAA-GATA 1320
Query 1327 ACGAAGATGAGAATTCTCGTGCATGCTAAAGTTT-CTATATACATTT 1372
||||||||||||||||||||||| |||||||| || |||| ||||
Sbjct 1321 ACGAAGATGAGAATTCTCGTGCAAAATAAAGTTTTCTTTATAGATTT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5