BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27630.1 Length=1529 Score E Sequences producing significant alignments: (Bits) Value Ahg472968 jgi|Araly1|472968|fgenesh2_kg.1__2922__AT1G27630.1 2242 0.0 > Ahg472968 jgi|Araly1|472968|fgenesh2_kg.1__2922__AT1G27630.1 Length=1514 Score = 2242 bits (1214), Expect = 0.0 Identities = 1432/1532 (93%), Gaps = 35/1532 (2%) Strand=Plus/Plus Query 1 AGGTCGCAACACCGCAATAGATCTTTTCCCCAAGTTTCAGACAAACATAAAGCAGCAGAG 60 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AGGTCGCAACACCGCAA-AGATCTTTTCCCCAAGTTTCAGACAAAAATAAAGCAGCAGAG 59 Query 61 AAAATTTTCAAGTTTCAAAG-AGCTTTTCCCTCACCAAGCAAAATTTG--GATA-TTTGT 116 |||||||||||||||||||| | ||| | | || || ||| |||| ||||| Sbjct 60 AAAATTTTCAAGTTTCAAAGCA-AATTTGGGTTA-TTTGC-TAA-TTGCAGATACTTTGT 115 Query 117 CAGCAAAATCTGCAGCTAAATTGGGACTTGTCTTGTTAGTTCAAAGATTGAAACTTTTTT 176 |||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 116 CAGCAATATCTGCAGCTAAATTGGGA-TTGTCTTGTTAGTTCAAAGATCCAAACATTTTT 174 Query 177 GGTTAA---TTG---TTTGGCGGAAGAAGATT--TACAATGGGAGAGGAGCATCCGAGAA 228 |||||| ||| ||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 175 GGTTAATTGTTGCTTTTTGGCGGAAGAAGATTACTACTATGGGAGAGGAGCATCCGAGAA 234 Query 229 AGCGGTCTAGACAACATTTTGAAGCGGAGGCGAGAAACGTATCGTTGTTTGAATCCCCTC 288 |||||||| |||||||||||||| | ||||||||| | ||||||||||| |||||||||| Sbjct 235 AGCGGTCTCGACAACATTTTGAATCAGAGGCGAGACAGGTATCGTTGTTGGAATCCCCTC 294 Query 289 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 354 Query 349 GAAAAGATGGGATTGATCTTGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 408 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 355 GAAAAGATGGGATTGACCTGGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 414 Query 409 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGGTTACAATATCATGTGCAATGGTGA 468 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 415 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGCTTACAATAGCATGTGCAATGGTGA 474 Query 469 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACAATAGCG- 527 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 475 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACGATAG-GA 533 Query 528 ACTTCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAGCCATGTCAACTGTCCAGTGTC 587 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 534 ACTGCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAACCATGTCAACTGTCCAGTGTC 593 Query 588 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 653 Query 648 CAAACTGAGTGTTATCATGAATTTAAAGAAATTATTTTGTCCGGGGAAAGTCTTCTGCTG 707 ||| |||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 654 CAATCTGAATGTTACCATGAATTTAAAGAAATTATTTTGGCCGGGGAGAGTCTTCTGCTG 713 Query 708 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAAACCTCTGGCTGCGGCTTTG 767 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 714 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAGACCTCTGGCTGCGGCTTTG 773 Query 768 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 833 Query 828 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACAGCCACTGTGCAC 887 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 834 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACGGCCACCGTGCAC 893 Query 888 CTAGCTGCTACGTTTCAGAATGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 947 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 894 CTAGCTGCTACGTTTCAGAACGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 953 Query 948 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1013 Query 1008 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCA 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1014 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAACTTGGGCA 1073 Query 1068 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCTTATCCGTTTCACAGCTACCCT 1127 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1074 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCATATCCGTTTCACAGCTACCCT 1133 Query 1128 TTGCAGTCCTATAGACAGGCTGGCATCTGGTGAGCCATTGTTGAGCAGCATGAAGATGTA 1187 |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| Sbjct 1134 CTGCAGTCCTATAGACAGGCTGGTATCTGGTAAACCATTGTTGAGCAGCATGAAGATGTA 1193 Query 1188 ATCTCTCTTAGAGTCTTGAGTT-GGTTTAGCAATAA-AAGATTTCCGTAGAGACTCATGA 1245 ||||||||| |||||||||||| |||| ||||| || |||||| |||| ||||||||||| Sbjct 1194 ATCTCTCTTGGAGTCTTGAGTTTGGTT-AGCAA-AAGAAGATT-CCGTGGAGACTCATGA 1250 Query 1246 GAGAGGCAGTGTAGCATT-ATATAGAGATCCGAGTGAGGTGCTTCTGTCTAAGTTAAGCG 1304 |||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| Sbjct 1251 GAGAGGCAATGTAGCATTTATATAGGGATCCGAGTGAGGTGCTTTTGTCTAAGTTAAGCC 1310 Query 1305 TCTCATGTATGACCAAAGTGGATTCTCTCGAGATTCTTGGTCTCTGTTCTCGATAGAGAG 1364 ||||| || |||||||||||||||||||| |||||||| |||| ||||||| ||||||| Sbjct 1311 TCTCAGGTGTGACCAAAGTGGATTCTCTCAAGATTCTTAGTCTTTGTTCTCT-TAGAGAG 1369 Query 1365 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTAGCT-GACTTTATATCGTT 1423 ||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||| Sbjct 1370 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTTG-TAGACTTCATATCGTT 1428 Query 1424 TGTATATCTGGAATCTATGTTTTTGGTTTCTTTAAAAAGTTTAAAGTTGTTTTGATTTTG 1483 |||||||||||| |||||||||||||||| || ||||||| ||| ||||||| || | Sbjct 1429 -GTATATCTGGAAACTATGTTTTTGGTTTCGTTCAAAAGTTCAAA-TTGTTTT--TT--G 1482 Query 1484 ACTAATTCTCTCATTGTTAAGTAATTTGGTTT 1515 ||| ||||||| ||||||||||||||||||| Sbjct 1483 ACTTGTTCTCTCTTTGTTAAGTAATTTGGTTT 1514 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57249638235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5