BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27630.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472968 jgi|Araly1|472968|fgenesh2_kg.1__2922__AT1G27630.1 2242 0.0
> Ahg472968 jgi|Araly1|472968|fgenesh2_kg.1__2922__AT1G27630.1
Length=1514
Score = 2242 bits (1214), Expect = 0.0
Identities = 1432/1532 (93%), Gaps = 35/1532 (2%)
Strand=Plus/Plus
Query 1 AGGTCGCAACACCGCAATAGATCTTTTCCCCAAGTTTCAGACAAACATAAAGCAGCAGAG 60
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AGGTCGCAACACCGCAA-AGATCTTTTCCCCAAGTTTCAGACAAAAATAAAGCAGCAGAG 59
Query 61 AAAATTTTCAAGTTTCAAAG-AGCTTTTCCCTCACCAAGCAAAATTTG--GATA-TTTGT 116
|||||||||||||||||||| | ||| | | || || ||| |||| |||||
Sbjct 60 AAAATTTTCAAGTTTCAAAGCA-AATTTGGGTTA-TTTGC-TAA-TTGCAGATACTTTGT 115
Query 117 CAGCAAAATCTGCAGCTAAATTGGGACTTGTCTTGTTAGTTCAAAGATTGAAACTTTTTT 176
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 116 CAGCAATATCTGCAGCTAAATTGGGA-TTGTCTTGTTAGTTCAAAGATCCAAACATTTTT 174
Query 177 GGTTAA---TTG---TTTGGCGGAAGAAGATT--TACAATGGGAGAGGAGCATCCGAGAA 228
|||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 175 GGTTAATTGTTGCTTTTTGGCGGAAGAAGATTACTACTATGGGAGAGGAGCATCCGAGAA 234
Query 229 AGCGGTCTAGACAACATTTTGAAGCGGAGGCGAGAAACGTATCGTTGTTTGAATCCCCTC 288
|||||||| |||||||||||||| | ||||||||| | ||||||||||| ||||||||||
Sbjct 235 AGCGGTCTCGACAACATTTTGAATCAGAGGCGAGACAGGTATCGTTGTTGGAATCCCCTC 294
Query 289 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 354
Query 349 GAAAAGATGGGATTGATCTTGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 408
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAAAAGATGGGATTGACCTGGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 414
Query 409 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGGTTACAATATCATGTGCAATGGTGA 468
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 415 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGCTTACAATAGCATGTGCAATGGTGA 474
Query 469 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACAATAGCG- 527
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 475 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACGATAG-GA 533
Query 528 ACTTCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAGCCATGTCAACTGTCCAGTGTC 587
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 ACTGCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAACCATGTCAACTGTCCAGTGTC 593
Query 588 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 653
Query 648 CAAACTGAGTGTTATCATGAATTTAAAGAAATTATTTTGTCCGGGGAAAGTCTTCTGCTG 707
||| |||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 654 CAATCTGAATGTTACCATGAATTTAAAGAAATTATTTTGGCCGGGGAGAGTCTTCTGCTG 713
Query 708 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAAACCTCTGGCTGCGGCTTTG 767
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 714 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAGACCTCTGGCTGCGGCTTTG 773
Query 768 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 833
Query 828 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACAGCCACTGTGCAC 887
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 834 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACGGCCACCGTGCAC 893
Query 888 CTAGCTGCTACGTTTCAGAATGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 947
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTAGCTGCTACGTTTCAGAACGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 953
Query 948 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1013
Query 1008 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCA 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAACTTGGGCA 1073
Query 1068 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCTTATCCGTTTCACAGCTACCCT 1127
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCATATCCGTTTCACAGCTACCCT 1133
Query 1128 TTGCAGTCCTATAGACAGGCTGGCATCTGGTGAGCCATTGTTGAGCAGCATGAAGATGTA 1187
|||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1134 CTGCAGTCCTATAGACAGGCTGGTATCTGGTAAACCATTGTTGAGCAGCATGAAGATGTA 1193
Query 1188 ATCTCTCTTAGAGTCTTGAGTT-GGTTTAGCAATAA-AAGATTTCCGTAGAGACTCATGA 1245
||||||||| |||||||||||| |||| ||||| || |||||| |||| |||||||||||
Sbjct 1194 ATCTCTCTTGGAGTCTTGAGTTTGGTT-AGCAA-AAGAAGATT-CCGTGGAGACTCATGA 1250
Query 1246 GAGAGGCAGTGTAGCATT-ATATAGAGATCCGAGTGAGGTGCTTCTGTCTAAGTTAAGCG 1304
|||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 1251 GAGAGGCAATGTAGCATTTATATAGGGATCCGAGTGAGGTGCTTTTGTCTAAGTTAAGCC 1310
Query 1305 TCTCATGTATGACCAAAGTGGATTCTCTCGAGATTCTTGGTCTCTGTTCTCGATAGAGAG 1364
||||| || |||||||||||||||||||| |||||||| |||| ||||||| |||||||
Sbjct 1311 TCTCAGGTGTGACCAAAGTGGATTCTCTCAAGATTCTTAGTCTTTGTTCTCT-TAGAGAG 1369
Query 1365 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTAGCT-GACTTTATATCGTT 1423
||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 1370 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTTG-TAGACTTCATATCGTT 1428
Query 1424 TGTATATCTGGAATCTATGTTTTTGGTTTCTTTAAAAAGTTTAAAGTTGTTTTGATTTTG 1483
|||||||||||| |||||||||||||||| || ||||||| ||| ||||||| || |
Sbjct 1429 -GTATATCTGGAAACTATGTTTTTGGTTTCGTTCAAAAGTTCAAA-TTGTTTT--TT--G 1482
Query 1484 ACTAATTCTCTCATTGTTAAGTAATTTGGTTT 1515
||| ||||||| |||||||||||||||||||
Sbjct 1483 ACTTGTTCTCTCTTTGTTAAGTAATTTGGTTT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5