BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27650.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472969 jgi|Araly1|472969|fgenesh2_kg.1__2923__AT1G27650.1 1969 0.0
Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 614 7e-175
> Ahg472969 jgi|Araly1|472969|fgenesh2_kg.1__2923__AT1G27650.1
Length=1300
Score = 1969 bits (1066), Expect = 0.0
Identities = 1242/1321 (94%), Gaps = 35/1321 (3%)
Strand=Plus/Plus
Query 55 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGGCGAGTGAGACGGCAGCTCCTCGTCG 114
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGACGAGTGAGACGGCAGCTCCTCGTCG 60
Query 115 G-TAATTCCTTCCACCGGCGGCGACCACTCACCCTCAGATCTCTCAATCCCACTCATCTC 173
| ||||||| |||||||||||||| | ||||||||||| |||| | || |||||
Sbjct 61 GCAAATTCCTCCCACCGGCGGCGACTATTCACCCTCAGA--TCTC--T--CA---ATCTC 111
Query 174 TGTAACATTCTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATCTTTGGTACTG 233
| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 112 TATAACATTTTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATTTTTGGTACTG 171
Query 234 AGAAAGACAGAGTGAATTGCCCTTTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 293
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 172 AGAAGGACAGAGTGAATTGCCCATTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 231
Query 294 GGTGCTCGCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCAAACATGT 353
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 232 GGTGCTCTCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCCAACATGT 291
Query 354 ACCAAAGGCCTGACATGATTACCCCTGGTGTTGACGCTCAGGGCCAACCACTCGACCCGC 413
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 292 ACCAAAGGCCTGACATGATAACCCCTGGTGTTGACGCTCAGGGCCAACCGCTCGACCCGC 351
Query 414 GTAAGATTCAGGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAGCTTGGAAAGT 473
||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 352 GTAAGATCCAAGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAACTCGGAAAGT 411
Query 474 TTGGCGAGATAGAGAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTGGCGAGATAGAAAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 471
Query 534 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 531
Query 594 GGTTCTATTCAGGACGTCCCATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAG 653
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 532 GGTTCTATTCAGGACGTCCCATCATTGCGGATTTCTCTCCTGTGACGGATTTCCGCGAAG 591
Query 654 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGC 713
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 592 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGCTACTGTAATTTCATGC 651
Query 714 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCAT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGGTCAT 711
Query 774 ACCGCAGAGGAAGTAGAAGCAGGAGCAGAAGCAGGAGTATTAGCCCCAGGAACAAGAGAG 833
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 712 ACCGCAGGGGAAGCAGAAGCAGGAGCAGAAGCAGAAGTATTAGCCCCAGGAACAAGAGAG 771
Query 834 A-TAATGACCGACGTGATCCTTCTCACAGGGAATTCAGTCATC-GGGACAGAGATCGCGA 891
| || |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 772 AGTA-TGACCGACGTGATCCTCCTCACAGGGAATTCAGTCA-CAGGGACAGAGATCGCGA 829
Query 892 GTTTTACCGTCATGGAAGTGGAAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAGAGGGA 951
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 830 GTTTTACCGTCATGGAAGCGGGAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAAAGGGA 889
Query 952 CGGTTCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGGAG 1011
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 890 TGGATCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGTAG 949
Query 1012 GGAAGGAAGTgaggagaggagggcaaggattgagcaatggaacagagaacgggaggagaa 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGAAGGAAGTGAGGAGAGGAGGGCAAGGATTGAGCAATGGAACAGAGAACGGGAGGAGAA 1009
Query 1072 ggaagagggaggagCATAAAAACAGTTGTTTACTCAAATCACAATTGCTGCTATGTGGTT 1131
||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||
Sbjct 1010 GGAAGAGGGAGGAGCATAAAA-CAGTTGGTTACTCAGATCATAATTGCTGCTATGTGGTT 1068
Query 1132 TCTGCGTCTGCTTCTCTGCGTTT----ATT----CTGAAATCGGTAAAATCTGGTGATGG 1183
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1069 TCTGCGTCTGCTTCTCTGCGTTTGCTGATTGTTTCTGAAATCGGTAAAATCTGGTGATGG 1128
Query 1184 ATTTTTCATTTGGCTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTTCTTTAGAT 1243
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1129 ATTTTTCATTTGGTTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTCCTTTAGAT 1188
Query 1244 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCGCTCTGTCCCCT 1303
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1189 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCG-T-TGTTGCCT 1246
Query 1304 TGTTA--TTGATTTTCACCAGTGTTCTTTAGAACTTTGTACTATCTTCTGTTGGTT-AAA 1360
|| ||| || | |||||| ||||||||||||||||||||||||||||| |||
Sbjct 1247 CGTCCCCTTG-TT---A---GTGTTCCTTAGAACTTTGTACTATCTTCTGTTGGTTTAAA 1299
Query 1361 A 1361
|
Sbjct 1300 A 1300
> Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1
Length=1211
Score = 614 bits (332), Expect = 7e-175
Identities = 517/607 (85%), Gaps = 10/607 (2%)
Strand=Plus/Plus
Query 200 ATGGCGGAGCATTTGGCTTCAATCTTTGGTACTGAGAAAGACAGAGTGAATTG-CCCTTT 258
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 131 ATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAATTGTCCGTTT 190
Query 259 CTACTTCAAGATTGGCGCTTGCCGTCATGGTGACCGGTGCTCGCGTCTTCACAACCGTCC 318
||||| |||||||| ||||| ||||| |||||||||||||| || ||||| ||||||||
Sbjct 191 -TACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCATAACCGTCC 249
Query 319 TACCATCTCCCCAACACTCCTTCTTTCAAACATGTACCAAAGGCCTGACATGATTACCCC 378
|| |||||||| || |||||||| || |||||||| || || ||||||||||| || ||
Sbjct 250 CACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACATGATAACTCC 309
Query 379 TGGTGTTGA-CGCTCAGGGCCAACCACTCGACCCGCGTAAGATTCAGGAGCACTTTGAGG 437
||||| || | ||||||| || ||| | |||||| ||||||| || || ||||||||||
Sbjct 310 AGGTGTGGATC-CTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCACTTTGAGG 368
Query 438 ATTTCTTTGAGGATCTTTTTGAGGAGCTTGGA-AAGTTTGGCG-AGATAGAGAGCCTCAA 495
|||||| ||| ||| |||| || || ||| | |||||||| | || | ||||| |||||
Sbjct 369 ATTTCTATGAAGATATTTTCGAAGAACTT-AACAAGTTTGGTGAAG-TGGAGAGTCTCAA 426
Query 496 CATTTGTGACAACCTTGCTGACCACATGATTGGCAACGTATATGTTCAGTTTAAGGAAGA 555
||||||| ||||||||||| || |||||||| || || ||||||| ||||||||| ||
Sbjct 427 TGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAAGGAGGA 486
Query 556 GGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTAGGTTCTATTCAGGACGTCCCAT 615
|||||| ||||| ||||| ||||||||| ||||||| ||||| || || |||||||| ||
Sbjct 487 GGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACGTCCTAT 546
Query 616 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAGCCACGTGTAGGCAGTATGAAGA 675
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 547 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTATGAAGA 606
Query 676 AAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCTTG-TTTCGAGGG 734
||||| || |||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 607 AAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCA-GATTTCGAGGG 665
Query 735 AACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCATACCGCAGAGGAAGTAGAAGCA 794
| || ||||| ||| | |||||||| ||||| || ||||||||| | ||||||||||||
Sbjct 666 AGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAGAAGCC 725
Query 795 GGAGCAG 801
|||||||
Sbjct 726 GGAGCAG 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5