BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27650.1 Length=1405 Score E Sequences producing significant alignments: (Bits) Value Ahg472969 jgi|Araly1|472969|fgenesh2_kg.1__2923__AT1G27650.1 1969 0.0 Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 614 7e-175 > Ahg472969 jgi|Araly1|472969|fgenesh2_kg.1__2923__AT1G27650.1 Length=1300 Score = 1969 bits (1066), Expect = 0.0 Identities = 1242/1321 (94%), Gaps = 35/1321 (3%) Strand=Plus/Plus Query 55 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGGCGAGTGAGACGGCAGCTCCTCGTCG 114 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGACGAGTGAGACGGCAGCTCCTCGTCG 60 Query 115 G-TAATTCCTTCCACCGGCGGCGACCACTCACCCTCAGATCTCTCAATCCCACTCATCTC 173 | ||||||| |||||||||||||| | ||||||||||| |||| | || ||||| Sbjct 61 GCAAATTCCTCCCACCGGCGGCGACTATTCACCCTCAGA--TCTC--T--CA---ATCTC 111 Query 174 TGTAACATTCTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATCTTTGGTACTG 233 | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 112 TATAACATTTTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATTTTTGGTACTG 171 Query 234 AGAAAGACAGAGTGAATTGCCCTTTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 293 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 172 AGAAGGACAGAGTGAATTGCCCATTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 231 Query 294 GGTGCTCGCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCAAACATGT 353 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 232 GGTGCTCTCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCCAACATGT 291 Query 354 ACCAAAGGCCTGACATGATTACCCCTGGTGTTGACGCTCAGGGCCAACCACTCGACCCGC 413 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 292 ACCAAAGGCCTGACATGATAACCCCTGGTGTTGACGCTCAGGGCCAACCGCTCGACCCGC 351 Query 414 GTAAGATTCAGGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAGCTTGGAAAGT 473 ||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 352 GTAAGATCCAAGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAACTCGGAAAGT 411 Query 474 TTGGCGAGATAGAGAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 533 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TTGGCGAGATAGAAAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 471 Query 534 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 531 Query 594 GGTTCTATTCAGGACGTCCCATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAG 653 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 532 GGTTCTATTCAGGACGTCCCATCATTGCGGATTTCTCTCCTGTGACGGATTTCCGCGAAG 591 Query 654 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGC 713 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 592 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGCTACTGTAATTTCATGC 651 Query 714 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCAT 773 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 652 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGGTCAT 711 Query 774 ACCGCAGAGGAAGTAGAAGCAGGAGCAGAAGCAGGAGTATTAGCCCCAGGAACAAGAGAG 833 ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 712 ACCGCAGGGGAAGCAGAAGCAGGAGCAGAAGCAGAAGTATTAGCCCCAGGAACAAGAGAG 771 Query 834 A-TAATGACCGACGTGATCCTTCTCACAGGGAATTCAGTCATC-GGGACAGAGATCGCGA 891 | || |||||||||||||||| ||||||||||||||||||| | |||||||||||||||| Sbjct 772 AGTA-TGACCGACGTGATCCTCCTCACAGGGAATTCAGTCA-CAGGGACAGAGATCGCGA 829 Query 892 GTTTTACCGTCATGGAAGTGGAAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAGAGGGA 951 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 830 GTTTTACCGTCATGGAAGCGGGAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAAAGGGA 889 Query 952 CGGTTCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGGAG 1011 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 890 TGGATCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGTAG 949 Query 1012 GGAAGGAAGTgaggagaggagggcaaggattgagcaatggaacagagaacgggaggagaa 1071 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 AGAAGGAAGTGAGGAGAGGAGGGCAAGGATTGAGCAATGGAACAGAGAACGGGAGGAGAA 1009 Query 1072 ggaagagggaggagCATAAAAACAGTTGTTTACTCAAATCACAATTGCTGCTATGTGGTT 1131 ||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||| Sbjct 1010 GGAAGAGGGAGGAGCATAAAA-CAGTTGGTTACTCAGATCATAATTGCTGCTATGTGGTT 1068 Query 1132 TCTGCGTCTGCTTCTCTGCGTTT----ATT----CTGAAATCGGTAAAATCTGGTGATGG 1183 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1069 TCTGCGTCTGCTTCTCTGCGTTTGCTGATTGTTTCTGAAATCGGTAAAATCTGGTGATGG 1128 Query 1184 ATTTTTCATTTGGCTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTTCTTTAGAT 1243 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1129 ATTTTTCATTTGGTTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTCCTTTAGAT 1188 Query 1244 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCGCTCTGTCCCCT 1303 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 1189 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCG-T-TGTTGCCT 1246 Query 1304 TGTTA--TTGATTTTCACCAGTGTTCTTTAGAACTTTGTACTATCTTCTGTTGGTT-AAA 1360 || ||| || | |||||| ||||||||||||||||||||||||||||| ||| Sbjct 1247 CGTCCCCTTG-TT---A---GTGTTCCTTAGAACTTTGTACTATCTTCTGTTGGTTTAAA 1299 Query 1361 A 1361 | Sbjct 1300 A 1300 > Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 Length=1211 Score = 614 bits (332), Expect = 7e-175 Identities = 517/607 (85%), Gaps = 10/607 (2%) Strand=Plus/Plus Query 200 ATGGCGGAGCATTTGGCTTCAATCTTTGGTACTGAGAAAGACAGAGTGAATTG-CCCTTT 258 ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| Sbjct 131 ATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAATTGTCCGTTT 190 Query 259 CTACTTCAAGATTGGCGCTTGCCGTCATGGTGACCGGTGCTCGCGTCTTCACAACCGTCC 318 ||||| |||||||| ||||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 191 -TACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCATAACCGTCC 249 Query 319 TACCATCTCCCCAACACTCCTTCTTTCAAACATGTACCAAAGGCCTGACATGATTACCCC 378 || |||||||| || |||||||| || |||||||| || || ||||||||||| || || Sbjct 250 CACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACATGATAACTCC 309 Query 379 TGGTGTTGA-CGCTCAGGGCCAACCACTCGACCCGCGTAAGATTCAGGAGCACTTTGAGG 437 ||||| || | ||||||| || ||| | |||||| ||||||| || || |||||||||| Sbjct 310 AGGTGTGGATC-CTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCACTTTGAGG 368 Query 438 ATTTCTTTGAGGATCTTTTTGAGGAGCTTGGA-AAGTTTGGCG-AGATAGAGAGCCTCAA 495 |||||| ||| ||| |||| || || ||| | |||||||| | || | ||||| ||||| Sbjct 369 ATTTCTATGAAGATATTTTCGAAGAACTT-AACAAGTTTGGTGAAG-TGGAGAGTCTCAA 426 Query 496 CATTTGTGACAACCTTGCTGACCACATGATTGGCAACGTATATGTTCAGTTTAAGGAAGA 555 ||||||| ||||||||||| || |||||||| || || ||||||| ||||||||| || Sbjct 427 TGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAAGGAGGA 486 Query 556 GGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTAGGTTCTATTCAGGACGTCCCAT 615 |||||| ||||| ||||| ||||||||| ||||||| ||||| || || |||||||| || Sbjct 487 GGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACGTCCTAT 546 Query 616 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAGCCACGTGTAGGCAGTATGAAGA 675 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 547 CATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTATGAAGA 606 Query 676 AAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCTTG-TTTCGAGGG 734 ||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 607 AAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCA-GATTTCGAGGG 665 Query 735 AACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCATACCGCAGAGGAAGTAGAAGCA 794 | || ||||| ||| | |||||||| ||||| || ||||||||| | |||||||||||| Sbjct 666 AGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAGAAGCC 725 Query 795 GGAGCAG 801 ||||||| Sbjct 726 GGAGCAG 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52526447855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5