BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27660.1
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472970 jgi|Araly1|472970|fgenesh2_kg.1__2924__AT1G27660.1 2665 0.0
> Ahg472970 jgi|Araly1|472970|fgenesh2_kg.1__2924__AT1G27660.1
Length=1777
Score = 2665 bits (1443), Expect = 0.0
Identities = 1687/1800 (94%), Gaps = 36/1800 (2%)
Strand=Plus/Plus
Query 29 TCATCTTTCTTTacacacaaacacacatacacacacatatataatacagagatcaggtat 88
||||||||||||||||||| |||||||| | |||| | ||||||||||||| |||
Sbjct 1 TCATCTTTCTTTACACACACACACACAT--ATACAC----A-GATACAGAGATCAGATAT 53
Query 89 a--ataaata-ct-tatatatataGCATCATCA-A-CTCTCATACATATATGGACTCTGC 142
| | ||||| || |||||||||| |||||||| | ||||||||| || |||||||||||
Sbjct 54 ACTACAAATACCTATATATATATATCATCATCATATCTCTCATACGTACATGGACTCTGC 113
Query 143 TAATCTCCATCAGCTTCAAGATCAATTACAGCTTGTGGGGTCTTCTTCATCTTCTTCTTC 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TAATCTCCATCAGCTTCAAGATCAATTACAGCTTGTGGGGTCTTCTTCATCTTCTTCTTC 173
Query 203 CTTAGACAATAACTCTGACCCTTCTTGCTATGGAGCTTCATCTGCCCATCAATGGAGCCC 262
|||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 174 CTTAGATAATAACTCTGATCCTTCTTGCTATGGAGCTTCCTCTGCTCATCAATGGAGCCC 233
Query 263 AGGAGGTATTTCTTTGAATAGTGTGAGCTTGAGTCATAATTATAACAATGAGATGTTAAA 322
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 AGGAGGTATTTCTTTGAATAGTGTGAGCTTGAGTCATAACTATAACAATGAGATGTTAAA 293
Query 323 CACAAGAGCTCacaacaacaacaacaacaacaacacaaGTGAATGTATGAGTCTCTCCAG 382
|||||||| | | ||||||||||||||||||| ||||||||||||||||
Sbjct 294 CACAAGAG-----------ATC-ACAACAACAACACAAGTGAGTGTATGAGTCTCTCCAC 341
Query 383 CATCCACAATCACTCCTTGATCCAACAACAAGACTTTCCTTTACAATGGCCTCATGACCA 442
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 342 CATCCACAATCACTCCTTGATCCAACAGCAAGACTTTCCTTTACAATGGCCTCATGACCA 401
Query 443 ATCTTCATATCAACATCATGAAGGACTTCTCAAGATCAAAGAAGAGCTTTCCTCATCAAC 502
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 402 ATCTTCATATCATCATCATGAAGGACTTCTCAAGATCAAAGAAGAGCTTTCCTCATCAGC 461
Query 503 TATCTCAGACCATCAAGAAGGCATATCCAAGTTCACAGACATGTTAAATAGTCCAGTGAT 562
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 462 TATCTCAGACCATCAAGAAGGCATATCCAAGTTCACAGACATGTTAAACAGTCCAGTGAT 521
Query 563 AACAAACTATTTGAAGATCAATGAACATAAGGACTACACTGAGAAGCTTCTTCTCAAGAG 622
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 522 CACAAACTATTTGAAGATCAATGAACATAAGGACTACACAGAGAAGCTTCTTCTAAAGAG 581
Query 623 TATGTCTTCTGGATTCCCGATCAATGGAGACTATGGTAGCAGCCTTCCCTCTTCTTCTTC 682
|||||||||||| ||||| |||| |||||| ||| |||||||||||||||||||||||||
Sbjct 582 TATGTCTTCTGGTTTCCCCATCAGTGGAGATTATTGTAGCAGCCTTCCCTCTTCTTCTTC 641
Query 683 TTCCTCTTCACCTTCGTCTCAGTCGCATAGAGGCAACTTCAGTCAGATTTACCCAAGCGT 742
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 642 TTCCTCTTCGCCTTCGTCTCAGTCTCATAGAGGCAATTTCAGTCAGATTTACCCAAGCGT 701
Query 743 AAACATATCGAGTTTGAGCGAATCTCGGAAGATGAGCATGGACGACATGAGTAACATCTC 802
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 702 AAACATATCGAGCTTGAGCGAGTCTCGGAAGATGAGCATGGACGACATGAGTAACATCCC 761
Query 803 AAGACCATTTGATATAAACATGCAGGTTTTTGATGGAAGATTGTTTGAAGGAAATGTATT 862
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 762 AAGACCATTTGATATGAACATGCAGGTTTTTGATGGAAGATTGTTTGAAGGGAATGTCTT 821
Query 863 AGTTCCTCCTTTTAACGCTCAAGAGATTAGTAGTCTTGGGATGAGCAGAGGAAGCCTTCC 922
|||||||||||| || ||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 822 AGTTCCTCCTTTGAATTCTCAAGAGATTAGCAATCTTGGGATGAGCAGAGGAAGCTTTCC 881
Query 923 TTCTTTTGGCCTCCCTTTTCATCATCATCTGCAGCAAACACTTCCCCACCTTTCTTCTTC 982
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 TCCTTTTGGCCTCCCTTTTCATCATCATCTGCAGCAAACACTTCCCCACCCTTCTTCTTC 941
Query 983 CCCTACTCATCAAATGGAAATGTTCAGCAATGAACCTCAAACAAGTGAAGGGAAGAGGCA 1042
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 942 CCCTACTCATCAAATGGAAATGTTCAGCAATGAATCTCAAACAAGTGAAGGGAAGAGACA 1001
Query 1043 TAACTTCTTGATGGCAACAAAAGCAGGAGAAAATGCTTCCAAGAAACCGCGCGTGGAATC 1102
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1002 TAACTTCTTGATGGCAACAAAGGCAGGCGAAAATGCTTCCAAGAAACCGCGCGTGGAATC 1061
Query 1103 ACGCTCCTCTTGCCCACCCTTCAAGGTGAGGAAAGAAAAGTTAGGAGACAGAATAGCAGC 1162
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1062 ACGCTCCTCTTGCCCACCCTTCAAGGTGAGGAAAGAGAAGTTAGGAGACAGAATAGCAGC 1121
Query 1163 TCTGCAGCAGTTGGTTTCACCCTTTGGGAAGACAGATACAGCATCTGTGTTAATGGAAGC 1222
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1122 TCTGCAGCAGTTGGTTTCACCCTTTGGAAAGACAGATACAGCATCTGTGTTAATGGAGGC 1181
Query 1223 AATTGGATACATCAAATTCCTACAGAGCCAGATCGAGACTTTAAGCGTCCCCTACATGAG 1282
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1182 AATTGGATACATCAAATTCCTACAGAGCCAGATTGAGACTTTAAGCGTCCCCTACATGAG 1241
Query 1283 AGCATCTAGGAACCGACCCGGAAAAGCCTCCCAGCTGGTCTCACAATCACAAGAAGGGGA 1342
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1242 AGCATCTAGGAACCGAACCGGAAAAGCCTCCCAGCTGGGCTCACAATCACAAGAAGGGGA 1301
Query 1343 TGAGGAAGAGACGAGAGATCTTAGAAGCCGTGGGCTATGTCTAGTGCCGTTATCATGCAT 1402
||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1302 TGAAGAAGAGACGAGGGATCTAAGAAGCCGTGGGCTGTGTCTAGTGCCGTTATCATGCAT 1361
Query 1403 GACTTATGTTACCGGAGATGGTGGGGATGGAGGAGGCGGTGTTGGTACTGGTTTTTGGCC 1462
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1362 GACTTATGTTACCGGAGATGGTGGGGACGGAGGAGGCGGTGTTGGTAGTGGGTTTTGGCC 1421
Query 1463 AACGCCACCTGGTTTTGGTGGCGGAACTTAGCCGTGGACTTAACAAACCGTAGGACTATG 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 AACGCCACCTGGTTTTGGTGGCGGAACTTAGCCGTGGACTTAACAAACCGTAGGACTATG 1481
Query 1523 -ATGAGTACATTTATCGGACTTGGAGGTAGAGAATAAG-AAGAAATGTTAAAGGTGGAGT 1580
|||||||||||||| ||| |||||||||||||| | | ||||||| || |||| |||||
Sbjct 1482 CATGAGTACATTTATGGGATTTGGAGGTAGAGAA-AGGGAAGAAATATTGAAGGCGGAGT 1540
Query 1581 ATTAGTTCTTTAATCTCTTTTGGTTTTGGTTTATTAATTGAAAT-TTTCGGTTTTGATAG 1639
|||||||||||||| ||||| | ||||||||||||||||||| | |||||||||||||||
Sbjct 1541 ATTAGTTCTTTAATTTCTTT-G-TTTTGGTTTATTAATTGAA-TGTTTCGGTTTTGATAG 1597
Query 1640 TGGAGCAAAGTTGGTCGTCCTGATTAGAAAGAAGTGTTACAGGATAGACCAGCTTTGATC 1699
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1598 TGGAGCAAAGTTGGTCGTCCTGATTAGAAAGAAGAATTACAGGATAGACCAGCTTTGATC 1657
Query 1700 CATTTAAGATTAGTA--G--TGAGACTTGACGATATGTTTCTACTTACATGATGGGCTGT 1755
|||||| |||||||| | |||||||||||||||||||||||||||||||| |||| ||
Sbjct 1658 CATTTATGATTAGTAATGAGTGAGACTTGACGATATGTTTCTACTTACATGAAGGGCCGT 1717
Query 1756 GGGGGCTACATAAAATATCAAATAGCTTTGGATTATTTTGTTAAATCTCTTTTGTAGATA 1815
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1718 GGGAGCTAAATAAAATATCAAATAGCTTTGTATTATTTTGTTAAATCTCTTTTGTAGATA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68752892225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5