BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27670.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921816 jgi|Araly1|921816|scaffold_103097.1 555 3e-157
> Ahg921816 jgi|Araly1|921816|scaffold_103097.1
Length=812
Score = 555 bits (300), Expect = 3e-157
Identities = 388/429 (90%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 372 TCCTCCTCCGCCGTAGTATCACAATCTTTGGCATCTGATAGCGAAGAAAAGACTTCAGAA 431
|||||| || ||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 390 TCCTCCCCCACCGTAGTATCAAAATCTTTGGCATC---T------GAAAAGACTTCAGAA 440
Query 432 GGAATGCCGGGTACGGAAC-TTACCTCCGTTAGTCTAACCGTCGGAGAGGCTCGACCGTT 490
||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||| |
Sbjct 441 GGAATGCAAGGTACGG-ACTTTACCTCCGTTAGTCTAACCGCCGGAGAGGCTCGACCAAT 499
Query 491 GAGGCGAGAGATGGTTCGGGCGGTCAGTTCTGTGGGGGAGACAGCTCATGCTATAAGGAG 550
|| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 500 GAAGCGAGAGATGGTCCGGGCGGTAAGTTCTGTGGGGGAGACAGCTCATGCTATAAGGAG 559
Query 551 GAAGCAAGAAATGACTTTTCTGCCTCCAGCTACTACTGAGAGTACTGCTACTGATCATCA 610
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 560 GAAGCGTGAAATGACTTTTCTGCGTCCAGCTACTACTGAGAGTACTGCTACTGATCATCA 619
Query 611 GGTTTACAGAAGGTCGAAATCGGAGAGGATTGACGTGCGGGGAGATTTACGCCGGAGTAT 670
||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 620 TGTTTATAGAAGGTCGAGATCGGAGAGGATTGACGTGCGGGGAGATCTACACCGGAGTAT 679
Query 671 GAGACGGTTGTGCGATATGGATGATCTGAGCAGTGATGAGTTTAGGTCAACGGTGGAGAC 730
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 680 GAGACGGTTGTGTGATATCGATGATCTGAGCAGCGATGAGTTTAGGTCAACGGTGGAGAC 739
Query 731 GTTTATAGCCGGaaaaaaaaaGATGTTGTCGAAGGAATGGGTTAAGCCGTGACTTATTAT 790
||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 740 GTTTATAGCAGGAAAAAAGAAGATGTTGTCCAAGGAATGGGTGAAGCCGTGATTTATTAC 799
Query 791 AACGAGGAA 799
|| |||||
Sbjct 800 AATTAGGAA 808
Score = 459 bits (248), Expect = 2e-128
Identities = 280/296 (95%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 88 ATGTTGCGGCTGAGAAAGTTGACGCCATGAGGAGGTTCGAGGGTACGAGAAtttttttGA 147
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 43 ATGTTGCGGCTGAGAAAGTTGACGCCATGAGGAGGTTCGAGGGGAGGAGAAATTTTTTGA 102
Query 148 ACTTTCTTCCGGCAGTTGAAGCTCTAGTTGCCGTGTTACTTCTACTCTATTGGTTAACGT 207
| |||||||||||||||| |||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 103 AGTTTCTTCCGGCAGTTGGAGCTCTCGTTGCAGTGTTACTTGTACTATATTGGTTAACGT 162
Query 208 CAACTTTCTTCGCCGGTGAGTATCTCCGGCGTATTATTTCCAGTGGTATGACCGGCGCCG 267
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 163 CAACTTTCTTCGCCGGTGAGTATCTCCGGAGTATTATTTCCAGTGGTTTGACCGGCGCCG 222
Query 268 GAATATACATATTTGGCGTCGTGAACGTTCTCGTTGCCCTGATCTTCTCTTTATCTAACC 327
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 223 GAATATACATATTTGGCGTCGTGAACGTTCTCATCGCCCTGATCTTCTCTTTATCTAACC 282
Query 328 ACCAGAAGCTAACCGAACACGATCTGTATTTTCAATACGTTTCCTCCTCCTCCGCC 383
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 283 ACCAGAAGCTAACCGAACACGATCTGTATTTTCAATACGTTTCTTCCTCGGCCGCC 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5