BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27680.1
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472972 jgi|Araly1|472972|fgenesh2_kg.1__2926__AT1G27680.1 2765 0.0
> Ahg472972 jgi|Araly1|472972|fgenesh2_kg.1__2926__AT1G27680.1
Length=1960
Score = 2765 bits (1497), Expect = 0.0
Identities = 1663/1742 (95%), Gaps = 15/1742 (1%)
Strand=Plus/Plus
Query 257 TATCTTTTTAGAATCTGATCTATCTCTTCTACTTCATTTCCCTTGCAt-ttttttAATAA 315
|||||||||||||||||||||| ||||||||||||||| |||||| | |||||||| ||
Sbjct 195 TATCTTTTTAGAATCTGATCTACCTCTTCTACTTCATTCCCCTTGTGTCTTTTTTAA-AA 253
Query 316 GTTGTAGAATC--TGTCTTGTTCTGGAAAAATATGGAGTCTTGCTTTCCTGCCATGAAGC 373
||||||||||| ||||||||||| |||||||||| || |||||| ||| |||| ||
Sbjct 254 GTTGTAGAATCTGTGTCTTGTTCT-GAAAAATATGAAGGCTTGCTGTCCAATCATG-AG- 310
Query 374 TGAAT-CA-GTGTACCTTTGGTCTCAACAACGAAATTGTCTCTGAGAGAGTTAGTGCGTT 431
| | | | | || ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 311 TCAGTGTACGAGTCCCTTTGGTCTCAACAACGAAATTGTCTCTGAGAGAGTTAGTGCCTT 370
Query 432 CTGGGGAACCCAAGTTGTCAAGCCCAATCATTTGAGGACAAC-GAAACTTAGGAGTGCAC 490
|||||||||||||||||||||| ||||| || ||| ||| || |||| ||||||||||||
Sbjct 371 CTGGGGAACCCAAGTTGTCAAGGCCAATAATCTGACGAC-ACAGAAAATTAGGAGTGCAC 429
Query 491 CTCAGAAGAAGATTCAGACAAACCTCATTCGCTCCGTTCTTACTCCATTTGTTGATCAAG 550
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTCAGAAGAAGATTCAGACGAACCTCATTCGCTCCGTTCTTACTCCATTTGTTGATCAAG 489
Query 551 AGTCTCATGAACCTCTGTTGAGAACTCAAAATGCAGACCCTAAGAATGTAGCGTCTATCA 610
| ||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 490 ACTCTCATGAACCTCTGCTGCGAACTCAAAATGCAGACCCAAAGAATGTAGCGTCTATCA 549
Query 611 TACTAGGTGGTGGTGCTGGGACTCGCTTGTTCCCTCTTACAAGCAAGAGAGCTAAACCTG 670
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 550 TACTAGGTGGCGGTGCTGGGACTCGCCTGTTCCCTCTTACAAGCAAGAGAGCTAAACCTG 609
Query 671 CGGTGCCAATTGGAGGGTGTTACAGGCTGATAGATATACCGATGAGCAATTGCATCAACA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CGGTGCCAATTGGAGGGTGTTACAGGCTGATAGATATACCGATGAGCAATTGCATCAACA 669
Query 731 GTGGTATTAGAAAGATCTTCATCTTAACTCAGTTCAACTCATTTTCTCTCAATCGCCAC- 789
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 670 GTGGTATTAGAAAGATCTTCATCTTAACTCAGTTCAACTCCTTTTCTCTCAATCGCCACC 729
Query 790 TTGTCTCGTACTTACAACTTTGGCAATGGAGTCAATTTTGGTGATGGGTTTGTTGAGGTC 849
|| ||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 730 TT-TCTTGTACTTACAACTTCGGGAATGGAGTCAACTTTGGTGATGGGTTTGTTGAGGTT 788
Query 850 CTTGCTGCAACCCAAACTTCCGGAGATGCAGGAAAGAAATGGTTTCAGGGAACTGCTGAT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CTTGCTGCAACCCAAACTTCCGGAGATGCAGGAAAGAAATGGTTTCAGGGAACTGCTGAT 848
Query 910 GCTGTTAGGCAGTTTATATGGGTCTTTGAGGATGCCAAGACAAAGAATGTGGAACATGTC 969
|| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 849 GCCGTCAGGCAATTTATATGGGTCTTTGAGGATGCTAAGACAAAGAATGTGGAACATGTC 908
Query 970 TTGATCTTGTCTGGGGATCATCTCTATCGGATGGATTACATGAACTTTGTGCAGAAGCAC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTGATCTTGTCTGGGGATCATCTCTATCGGATGGATTACATGAACTTTGTGCAGAAGCAC 968
Query 1030 ATTGAGTCCAATGCTGATATCACAGTTTCTTGTCTTCCCATGGATGAGAGCCGTGCTTCG 1089
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ATTGAGTCAAATGCTGATATCACAGTTTCTTGTCTTCCCATGGATGAGAGCCGTGCTTCG 1028
Query 1090 GACTTTGGGCTGCTTAAAATTGACCAGTCTGGTAAAATCATTCAATTCTCGGAAAAACCA 1149
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1029 GATTTTGGGCTGCTTAAAATTGACCAGTCTGGAAAAATCATTCAATTCTCGGAAAAACCA 1088
Query 1150 AAGGGAGATGACTTAAAGGCAATGCAAGTTGACACTTCCATTCTTGGTTTACCACCGAAA 1209
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1089 AAGGGAGATGACTTAAAGGCAATGCAAGTTGACACTTCCATTCTTGGGTTACCAACGAAA 1148
Query 1210 GAAGCTGCGGAGTCCCCATACATTGCATCGATGGGTGTTTACGTATTTAGAAAAGAGGTT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GAAGCTGCGGAGTCCCCATACATTGCATCGATGGGTGTTTACGTATTTAGAAAAGAGGTT 1208
Query 1270 TTGCTAAAGCTTCTAAGGTCAAGTTATCCTACATCCAATGACTTTGGTTCTGAAATTATC 1329
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TTGTTAAAGCTTCTAAGGTCAAGTTATCCTACATCCAATGACTTTGGTTCTGAAATTATC 1268
Query 1330 CCGTTGGCCGTAGGGGAGCATAATGTTCAGGCATTTTTGTTCAATGACTATTGGGAGGAT 1389
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CCGTTGGCCGTAAGGGAGCATAATGTTCAGGCATTTTTGTTCAATGACTATTGGGAGGAT 1328
Query 1390 ATTGGAACCATAGGATCATTCTTTGATGCCAATTTAGCCCTCACGGAACAGCCTCCTAAA 1449
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1329 ATTGGAACCATAGGATCATTCTTTGATGCCAATTTAGCCCTCACAGAACAGCCTCCTAAA 1388
Query 1450 TTCCAATTCTACGATCAAAAAACACCCTTCTTCACTTCTCCAAGATTCTTGCCACCTACC 1509
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1389 TTCCAATTCTACGATCCAAAAACACCCTTCTTCACTTCTCCAAGATTCCTGCCACCTACC 1448
Query 1510 AAAGTTGATAAATGCAGGATACTTGATTCCATAGTTTCACATGGATGCTTCTTGAGAGAA 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAAGTTGATAAATGCAGGATACTTGATTCCATAGTTTCACATGGATGCTTCTTGAGAGAA 1508
Query 1570 TGCAGTGTGCAGCACTCAATCGTTGGCATACGATCACGTCTCGAGTCTGGAGTAGAGCTT 1629
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1509 TGCAGTGTGCAGCACTCTATCGTTGGCATACGATCACGTATAGAGTCTGGAGTAGAGCTT 1568
Query 1630 CAGGATACAATGATGATGGGAGCTGATTTCTACCAAACGGAAGCTGAGATCGCGTCTCTT 1689
|||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1569 CAGGATACGATGATGATGGGAGCTGATTTCTACCAGACAGAAGCTGAAATCGCGTCTCTT 1628
Query 1690 TTGGCGGAAGGGAAAGTTCCGGTAGGGGTTGGCCAGAACACAAAAATCAAGAACTGTATC 1749
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 1629 TTGGCGGAAGGGAAAGTTCCGGTAGGGGTCGGCCAGAACACCAAAATCAGGAACTGTATC 1688
Query 1750 ATTGACAAGAACGCCAAGATCGGGAAGAACGTGGTCATAGCGAATGCAGATGGCGTGGAA 1809
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1689 ATTGACAAGAACGCCAAGATCGGGAAGAACGTGATCATAGCGAATGCAGATGGCGTGGAA 1748
Query 1810 GAAGGCGATAGACCAGAGGAAGGGTTTCACATAAGATCAGGCATCACCGTTGTGCTGAAG 1869
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1749 GAAGGAGATAGGCCAGAGGAAGGGTTTCACATAAGATCAGGGATCACCGTTGTGCTGAAG 1808
Query 1870 AACGCCACCATTAGAGATGGTCTGCATATTTAAGCTTTTAAACCTCTCTTTAGGAGCAGT 1929
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1809 AACGCCACCATTAGAGATGGTCTGCATATTTA-GCTTTTAAACCTCTCTT-AGGAGCAGT 1866
Query 1930 GTATGTGGCTTCTTGTGATTTTGTAACGAGACTAGTTACGTTCGATTAATAATTTAATAA 1989
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1867 GTATGTCGCTTCTTGTGATTTTGTAACGAGACTAGGTACGTTCGATTAATAATTTAATAA 1926
Query 1990 AA 1991
||
Sbjct 1927 AA 1928
Score = 230 bits (124), Expect = 4e-59
Identities = 186/213 (87%), Gaps = 16/213 (8%)
Strand=Plus/Plus
Query 1 ATCACGAGGATCATCACATTAAACTCTGTTTTGTTGATCTCTCTTTCTGTTCCGTTTCTC 60
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1 ATCACGAGGATCATCACATTAAACTCTGTTTTGTTGATCTCTCTCTCTCTTCCGTTTCTC 60
Query 61 TTTCCACTGCCAAAAGTTAAAGCTCTCTCTCTCACTCAATCACACACTCATTTCTCACTA 120
|||||||||| |||||||||||||| ||| |||||||| || ||||||||||| |
Sbjct 61 TTTCCACTGCGAAAAGTTAAAGCTCACTCCCTCACTCACTC------TCATTTCTCACCA 114
Query 121 TTTCACAACTTCCTTGTGGACAAAATTAGTCGACTTCTCTGTTCTCTCCAACACTGTTTC 180
|| ||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 115 CTTGACAACTTCCTTGTGGACAAAATTAGTCGACTTCTC----C-----AACTCTGTTTC 165
Query 181 GTTTTCACTACCCAAAATTCGAATCTGGGTTAT 213
||||||||| |||||||| ||||||||||||||
Sbjct 166 GTTTTCACTCCCCAAAAT-CGAATCTGGGTTAT 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5