BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27690.1
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472973 jgi|Araly1|472973|fgenesh2_kg.1__2927__AT1G27690.1 2473 0.0
> Ahg472973 jgi|Araly1|472973|fgenesh2_kg.1__2927__AT1G27690.1
Length=1553
Score = 2473 bits (1339), Expect = 0.0
Identities = 1488/1560 (95%), Gaps = 10/1560 (1%)
Strand=Plus/Plus
Query 27 CACCAAACCTGCGTCTTCTCTCTCACACTACTAACAACACTTCCTTCTTCTTCTTCCGAC 86
|||||||||| | |||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 1 CACCAAACCTTCATCTTCTCTCT--CAC-ACTAACAACA----CTTCTTCTTCTTCCGAC 53
Query 87 TATGGATAAGAAGCACGGCTTGTTCTCCAAGTCTAATTCCCGGCGACCACGATCCAAGAG 146
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 54 TATGGATAAGAAGCACGGCTTGTTCTCCAAGTCTAATTCCCGGCGATCACGATCCAAGAG 113
Query 147 TCCAGTCAGAAGCGTCTCTCCGATCATCATCCGTCGCCGGAAAGGCCGTTACGTCACACA 206
||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct 114 TCCTGTCCGAAGCGTCTCTCCGATCATCATCCGTCGCCGCAAAGGTCGTTACGTCTCCCA 173
Query 207 ACCGGACCGGCACATGTCTGAGATGCTTGCTCCGGTTATAGAAGGTCCTGATCCAGACGC 266
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 174 ACCGGACCGGCACATGTCTGAGATGCTTGCTCCGGTTAGAGAAGGTCCTGATCCAGACGG 233
Query 267 TGAAGACTCCGGAAGCAGTGGTGATTACTCTAGGTTCGAGAGACGTTGGTACAATTGGAT 326
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 234 TGAAGACTCCGGAAGTAGTGGTGATTACTCTAGGTTCGAGAGACGCTGGTACAATTGGAT 293
Query 327 GAAATGTCAGCTTCCGGTGGCTCCGCCGTCAGTATCGTCCTCTTCGGATTTCAAACGAAC 386
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 GAAATGTCAGCTTCCGGTGGCTCCGCCGTCAGTATCGTCGTCTTCGGATTTCAAACGAAC 353
Query 387 GGATCTGAGGCTTCTCCTCGGTGTTCTTGGCGCACCTTTAGGTCCTGTGCACGTTAGCGC 446
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 GGATCTGAGGCTTTTGCTCGGTGTTCTTGGCGCACCTTTAGGTCCTGTGCACGTTAGTGC 413
Query 447 TCTGGATCTCCTTCCACACCTCAGTATCAAGAATACACCTATGGAGACTTCCTCTGCTCA 506
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 414 TCTGGATCTCCTTCCACACCTCAGTATTAAAAATACACCTATGGAGACCTCCTCTGCTCA 473
Query 507 GTACATACTTCAGCAGTATACGGCTGCATCAGGAGGTCAAAAGCTTCATAGTTCTGTGCA 566
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 GTACATACTTCAGCAGTATACGGCTGCATCAGGTGGTCAAAAGCTTCATAGTTCTGTGCA 533
Query 567 AAATGGATATGTTATGGGAAGAATCAGGACGATGGCTTCAGAGTTTGAGACAGGCTCAAA 626
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 534 AAATGGTTATGTTATGGGAAGAATCAGGACGATGGCCTCGGAGTTTGAGACAGGCTCAAA 593
Query 627 AGGTTCAAAGAGCAAGAATAATTCGTCAAAAGCTGTTGAGTCTGGAGGATTTGTGTTGTG 686
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 594 AGGTTCAAAGAGCAAGAATAATTCGTCAAAATCTGTCGAGTCTGGAGGATTTGTGTTGTG 653
Query 687 GCATATGAATCCTGATATGTGGTACATGGAGCTTGTTCTTGGTGGGAGCAAGGTTCTTGC 746
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCATATGAATCCTGACATGTGGTACATGGAGCTTGTTCTTGGTGGGAGCAAGGTTCTTGC 713
Query 747 AGGTTGTGACGGGAAGCTTGTGTGGAGACACACACCATGGCTTGGACCTCATGCTGCAAA 806
||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 714 GGGTTGTGACGGAAAGCTTGTGTGGAGGCACACACCATGGCTTGGGCCTCATGCTGCAAA 773
Query 807 AGGACCGGTTAGACCATTACGACGTGCTCTGCAGGGACTTGACCCGAGGACCACAGCGTA 866
||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 774 AGGACCGGTTAGACCATTACGGCGTGCTCTTCAGGGCCTTGACCCGAGAACCACAGCGTA 833
Query 867 TATGTTTGCAAATGCAAGGTGCATAGGAGaaaaaaaGATCGATGGAGAAGACTGTTTCAT 926
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 834 TATGTTTGCAAATGCAAGATGCATAGGAGAAAAAAAGATTGATGGAGAGGACTGTTTCAT 893
Query 927 TCTCAAGCTATGTGCAGACCCGGCAACACTCAAAGCTAGAAGCGAAGGGGCATCAGAGAC 986
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCTCAAGCTATGCGCAGACCCAGCAACACTCAAAGCTAGAAGCGAAGGGGCATCAGAGAC 953
Query 987 CATAAGACATACGTTGTTCGGTTACTTCAGCCAAAAAACCGGTCTGCTTGTTCACTTAGA 1046
|||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 954 CATAAGGCATACTTTGTTTGGTTACTTCAGCCAAAAAACCGGTCTTCTTGTTCACTTAGA 1013
Query 1047 AGACTCCCAGCTAACCCGAATCCAAAACAATGGAGGCGAAGCGGTTTACTGGGAGACGAC 1106
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1014 AGACTCCCAGCTAACCCGAATCCAAAACAATGGAGGTGAAGCGGTTTACTGGGAGACAAC 1073
Query 1107 CATCAACTCATACCTAGAAGACTACAAACCTGTCGAAGGTATCATGATAGCTCACTCTGG 1166
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1074 CATCAATTCATACCTAGAAGACTACAAACCCGTCGAAGGCATCATGATAGCTCACTCTGG 1133
Query 1167 TAGATCCGTGGCTACGCTTTTAAGGTTTGGAGATATGTCATCAGGACATAACACTAAGAC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TAGATCCGTGGCTACGCTTTTAAGGTTTGGAGATATGTCATCAGGACATAACACTAAGAC 1193
Query 1227 CACAATGCAAGAAGCATGGGTCATCGATGAAATCTCGTTCAATGTCCCTGGCTTGTCTAT 1286
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1194 CACAATGCAAGAAGCATGGGTCATCGATGAAATCGCGTTCAATGTCCCTGGCTTGTCTAT 1253
Query 1287 AGATTGCTTCATTCCACCTTCAGAACTCAGATTTGATTCCCACGTTGAAGACTTATCTCA 1346
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGATTGCTTCATTCCACCTTCTGAACTCAGATTTGATTCCCACGTTGAAGACTTATCTCA 1313
Query 1347 AGGCCCCAAAATTAGGACATTGCACGGCCATAAAAATGGTTGATGTGAAGAAGCAGGAGA 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGGCCCCAAAATTAGGACATTGCACGGCCATAAAAATGGTTGATGTGAAGAAGCAGGAGA 1373
Query 1407 TCAATGTGTATAACTCATTCAAAAACAAACCCTAGACCGGTTATTT-TACTTTTGCTATT 1465
||||||||||||||||||||||||||||| |||||| || ||| || ||| ||||||||
Sbjct 1374 TCAATGTGTATAACTCATTCAAAAACAAATCCTAGATCGTTTAATTCTACATTTGCTATC 1433
Query 1466 GTCGAAGCTAAAATTCTTGTAGGAAGTTTCGTTGAAGTTGTAAATAGACAGCAGGAGAAG 1525
||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1434 GTCTAAGCTAAAATTCTTGTAGGGAGTTTCGTTGAAGATGTAAATAGACAGCAGGAGAAT 1493
Query 1526 TTCGTTCTTTTTGCCGCATAATGTTAGGAATGTGTA--GTCTTAGTAAGGTCAGTCCAAT 1583
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1494 TTAGTTCTTTTTGCCGCATAATGTTAGGAATGTGTATAGTCTTAGTAAGGTCAGTCCAAT 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62201370085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5